miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16338 5' -53.6 NC_004084.1 + 26185 0.69 0.689616
Target:  5'- gUCCCAa--CGACCGUCggCGUCgUCGa -3'
miRNA:   3'- -AGGGUagaGCUGGCAGa-GCAGaAGCg -5'
16338 5' -53.6 NC_004084.1 + 35612 0.69 0.689616
Target:  5'- gCCCgAUCUCcACaGUCagGUCUUCGCu -3'
miRNA:   3'- aGGG-UAGAGcUGgCAGagCAGAAGCG- -5'
16338 5' -53.6 NC_004084.1 + 26996 0.69 0.678807
Target:  5'- aUCCAUCgCGGCCGcgUCGUCUgcgacuUCGCc -3'
miRNA:   3'- aGGGUAGaGCUGGCagAGCAGA------AGCG- -5'
16338 5' -53.6 NC_004084.1 + 50503 0.7 0.646161
Target:  5'- aUCCgCGUCUucuucgcgcCGACUGUCUCGguUCggaUCGCg -3'
miRNA:   3'- -AGG-GUAGA---------GCUGGCAGAGC--AGa--AGCG- -5'
16338 5' -53.6 NC_004084.1 + 6538 0.7 0.646161
Target:  5'- gUCCCAgaUCUCGACCGg--CGUCcgguagUUCGa -3'
miRNA:   3'- -AGGGU--AGAGCUGGCagaGCAG------AAGCg -5'
16338 5' -53.6 NC_004084.1 + 1432 0.7 0.6134
Target:  5'- gUCgCCGUcCUCGGCCGcCUC--CUUCGCu -3'
miRNA:   3'- -AG-GGUA-GAGCUGGCaGAGcaGAAGCG- -5'
16338 5' -53.6 NC_004084.1 + 47851 0.7 0.606857
Target:  5'- gUCCCGUCUCGAUCGacagccaccccgagcUaCUCGUC--CGCu -3'
miRNA:   3'- -AGGGUAGAGCUGGC---------------A-GAGCAGaaGCG- -5'
16338 5' -53.6 NC_004084.1 + 14875 0.71 0.569981
Target:  5'- gCCgGUCUCGguGCCGUgcUUCGUCagCGCg -3'
miRNA:   3'- aGGgUAGAGC--UGGCA--GAGCAGaaGCG- -5'
16338 5' -53.6 NC_004084.1 + 49136 0.72 0.53791
Target:  5'- aUCCAcuUCUCGACCGUCUCuGUa---GCg -3'
miRNA:   3'- aGGGU--AGAGCUGGCAGAG-CAgaagCG- -5'
16338 5' -53.6 NC_004084.1 + 56811 0.72 0.496179
Target:  5'- -gCCAUCUuCGACCG-CUUGUCUgccaaccagCGCg -3'
miRNA:   3'- agGGUAGA-GCUGGCaGAGCAGAa--------GCG- -5'
16338 5' -53.6 NC_004084.1 + 40573 0.74 0.427
Target:  5'- aCCgaCAUCUCGGCCGUCUCGagcucggCUUCu- -3'
miRNA:   3'- aGG--GUAGAGCUGGCAGAGCa------GAAGcg -5'
16338 5' -53.6 NC_004084.1 + 50924 0.77 0.292676
Target:  5'- cCCCGUCggcCGACuugcuCGUCUCGcCUUCGCc -3'
miRNA:   3'- aGGGUAGa--GCUG-----GCAGAGCaGAAGCG- -5'
16338 5' -53.6 NC_004084.1 + 25204 0.78 0.245181
Target:  5'- gCCCG-CUCGGCCGcCUCuGUCUUCGg -3'
miRNA:   3'- aGGGUaGAGCUGGCaGAG-CAGAAGCg -5'
16338 5' -53.6 NC_004084.1 + 12747 0.8 0.17403
Target:  5'- aUCUCGUCgacgcCGACCGUCUCGUCguugUCGg -3'
miRNA:   3'- -AGGGUAGa----GCUGGCAGAGCAGa---AGCg -5'
16338 5' -53.6 NC_004084.1 + 13644 1.12 0.001302
Target:  5'- uUCCCAUCUCGACCGUCUCGUCUUCGCc -3'
miRNA:   3'- -AGGGUAGAGCUGGCAGAGCAGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.