miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16338 5' -53.6 NC_004084.1 + 26996 0.69 0.678807
Target:  5'- aUCCAUCgCGGCCGcgUCGUCUgcgacuUCGCc -3'
miRNA:   3'- aGGGUAGaGCUGGCagAGCAGA------AGCG- -5'
16338 5' -53.6 NC_004084.1 + 26185 0.69 0.689616
Target:  5'- gUCCCAa--CGACCGUCggCGUCgUCGa -3'
miRNA:   3'- -AGGGUagaGCUGGCAGa-GCAGaAGCg -5'
16338 5' -53.6 NC_004084.1 + 25784 0.68 0.732197
Target:  5'- gUUUCAa--CGACCGUCUCGUCcucCGCa -3'
miRNA:   3'- -AGGGUagaGCUGGCAGAGCAGaa-GCG- -5'
16338 5' -53.6 NC_004084.1 + 25204 0.78 0.245181
Target:  5'- gCCCG-CUCGGCCGcCUCuGUCUUCGg -3'
miRNA:   3'- aGGGUaGAGCUGGCaGAG-CAGAAGCg -5'
16338 5' -53.6 NC_004084.1 + 22370 0.67 0.788018
Target:  5'- cCCCAccaggguaugCGGCCGUcCUCGUCUccguuccuuccgguUCGCu -3'
miRNA:   3'- aGGGUaga-------GCUGGCA-GAGCAGA--------------AGCG- -5'
16338 5' -53.6 NC_004084.1 + 21596 0.66 0.856042
Target:  5'- -aCCGgcgagcagCUgGACCGUCUCGggacgaUCUUCGa -3'
miRNA:   3'- agGGUa-------GAgCUGGCAGAGC------AGAAGCg -5'
16338 5' -53.6 NC_004084.1 + 19931 0.66 0.856042
Target:  5'- gCCgAUCUCGACCaG-CUCGUCcaggUUGg -3'
miRNA:   3'- aGGgUAGAGCUGG-CaGAGCAGa---AGCg -5'
16338 5' -53.6 NC_004084.1 + 19067 0.66 0.847642
Target:  5'- aUCCGUaagggcgCGGCCGUCUaCGUCgacgUCGa -3'
miRNA:   3'- aGGGUAga-----GCUGGCAGA-GCAGa---AGCg -5'
16338 5' -53.6 NC_004084.1 + 17325 0.66 0.830183
Target:  5'- cUCCCGcggCGACggcccgcauCGUCUCGUCgacguacUCGCg -3'
miRNA:   3'- -AGGGUagaGCUG---------GCAGAGCAGa------AGCG- -5'
16338 5' -53.6 NC_004084.1 + 14875 0.71 0.569981
Target:  5'- gCCgGUCUCGguGCCGUgcUUCGUCagCGCg -3'
miRNA:   3'- aGGgUAGAGC--UGGCA--GAGCAGaaGCG- -5'
16338 5' -53.6 NC_004084.1 + 13644 1.12 0.001302
Target:  5'- uUCCCAUCUCGACCGUCUCGUCUUCGCc -3'
miRNA:   3'- -AGGGUAGAGCUGGCAGAGCAGAAGCG- -5'
16338 5' -53.6 NC_004084.1 + 12747 0.8 0.17403
Target:  5'- aUCUCGUCgacgcCGACCGUCUCGUCguugUCGg -3'
miRNA:   3'- -AGGGUAGa----GCUGGCAGAGCAGa---AGCg -5'
16338 5' -53.6 NC_004084.1 + 7266 0.69 0.71106
Target:  5'- -aCCGUCUCGAUCGccucCUCGUUcgggaUCGCc -3'
miRNA:   3'- agGGUAGAGCUGGCa---GAGCAGa----AGCG- -5'
16338 5' -53.6 NC_004084.1 + 6538 0.7 0.646161
Target:  5'- gUCCCAgaUCUCGACCGg--CGUCcgguagUUCGa -3'
miRNA:   3'- -AGGGU--AGAGCUGGCagaGCAG------AAGCg -5'
16338 5' -53.6 NC_004084.1 + 1432 0.7 0.6134
Target:  5'- gUCgCCGUcCUCGGCCGcCUC--CUUCGCu -3'
miRNA:   3'- -AG-GGUA-GAGCUGGCaGAGcaGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.