miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16339 5' -54.4 NC_004084.1 + 21930 0.66 0.828283
Target:  5'- cCCCAguaguCCCGguUGAaguGCGGGUCGAGa- -3'
miRNA:   3'- -GGGUagu--GGGC--ACU---UGCUCAGCUCgc -5'
16339 5' -54.4 NC_004084.1 + 42556 0.66 0.828283
Target:  5'- aCUGUcCACCCGacgaUGGAUGGGgCGAGCu -3'
miRNA:   3'- gGGUA-GUGGGC----ACUUGCUCaGCUCGc -5'
16339 5' -54.4 NC_004084.1 + 20870 0.66 0.828283
Target:  5'- aCCG-CGCCgGcGAugGAaUCGAGCGu -3'
miRNA:   3'- gGGUaGUGGgCaCUugCUcAGCUCGC- -5'
16339 5' -54.4 NC_004084.1 + 51717 0.66 0.816528
Target:  5'- -aCAUCGCCgGcguugaccucgagaUGGACGucGUCGAGCa -3'
miRNA:   3'- ggGUAGUGGgC--------------ACUUGCu-CAGCUCGc -5'
16339 5' -54.4 NC_004084.1 + 32080 0.66 0.810065
Target:  5'- gUCC-UC-CCCGaacuugaacggaUGGACGAGcUCGAGCa -3'
miRNA:   3'- -GGGuAGuGGGC------------ACUUGCUC-AGCUCGc -5'
16339 5' -54.4 NC_004084.1 + 30131 0.66 0.799732
Target:  5'- cCCCgAUCGcgagacuCCCGUccACGAGUCGAagccGCGa -3'
miRNA:   3'- -GGG-UAGU-------GGGCAcuUGCUCAGCU----CGC- -5'
16339 5' -54.4 NC_004084.1 + 1659 0.66 0.791124
Target:  5'- gCUCGUCAUCa-UGGGCucGUCGGGCGa -3'
miRNA:   3'- -GGGUAGUGGgcACUUGcuCAGCUCGC- -5'
16339 5' -54.4 NC_004084.1 + 25977 0.66 0.79016
Target:  5'- cCCCAUCgaccucgACCuCGUucgcGACGAGUgCGAGCu -3'
miRNA:   3'- -GGGUAG-------UGG-GCAc---UUGCUCA-GCUCGc -5'
16339 5' -54.4 NC_004084.1 + 7603 0.67 0.781407
Target:  5'- gCCggCGCCCGcGAACGGGUCcAGg- -3'
miRNA:   3'- gGGuaGUGGGCaCUUGCUCAGcUCgc -5'
16339 5' -54.4 NC_004084.1 + 27557 0.67 0.781407
Target:  5'- gCCAUCGaaCGUG-ACGAG-CGGGCc -3'
miRNA:   3'- gGGUAGUggGCACuUGCUCaGCUCGc -5'
16339 5' -54.4 NC_004084.1 + 27261 0.67 0.781407
Target:  5'- aCCCggauGUCGCCgaaaggUGUGAACGAuGUCGucaAGCGc -3'
miRNA:   3'- -GGG----UAGUGG------GCACUUGCU-CAGC---UCGC- -5'
16339 5' -54.4 NC_004084.1 + 29734 0.67 0.761534
Target:  5'- gCCGUcCGCCCaGUGcuCGAcGUUGAGCu -3'
miRNA:   3'- gGGUA-GUGGG-CACuuGCU-CAGCUCGc -5'
16339 5' -54.4 NC_004084.1 + 49629 0.67 0.741146
Target:  5'- uCUCGUCGCCgGgcuccgucgaGAugGAGUCG-GCGu -3'
miRNA:   3'- -GGGUAGUGGgCa---------CUugCUCAGCuCGC- -5'
16339 5' -54.4 NC_004084.1 + 56572 0.68 0.733904
Target:  5'- gUCCGUCGCgcugcaggagccacaCCGUGAACGcggcgucgucgccGGUCG-GCGa -3'
miRNA:   3'- -GGGUAGUG---------------GGCACUUGC-------------UCAGCuCGC- -5'
16339 5' -54.4 NC_004084.1 + 16122 0.68 0.70979
Target:  5'- aUCGUCGCCgauCGUGAACGGGU-GAccGCGg -3'
miRNA:   3'- gGGUAGUGG---GCACUUGCUCAgCU--CGC- -5'
16339 5' -54.4 NC_004084.1 + 55673 0.68 0.699176
Target:  5'- gCCAUCGCCga-GAGCGAGUCGGa-- -3'
miRNA:   3'- gGGUAGUGGgcaCUUGCUCAGCUcgc -5'
16339 5' -54.4 NC_004084.1 + 55310 0.68 0.677769
Target:  5'- gCCCcgUACUCGUGGAUGAG--GAGCc -3'
miRNA:   3'- -GGGuaGUGGGCACUUGCUCagCUCGc -5'
16339 5' -54.4 NC_004084.1 + 1176 0.69 0.623693
Target:  5'- gUCAUCGCCgacgcgguCGUGGACGuAGUCGcguaAGCGg -3'
miRNA:   3'- gGGUAGUGG--------GCACUUGC-UCAGC----UCGC- -5'
16339 5' -54.4 NC_004084.1 + 57123 0.73 0.418501
Target:  5'- uCCUAUCACUCaucGAGCGAGcCGGGCa -3'
miRNA:   3'- -GGGUAGUGGGca-CUUGCUCaGCUCGc -5'
16339 5' -54.4 NC_004084.1 + 57591 0.75 0.340227
Target:  5'- gCCAgUCGCCCGUcucGAACGGGUUGAGg- -3'
miRNA:   3'- gGGU-AGUGGGCA---CUUGCUCAGCUCgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.