Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1634 | 3' | -50.4 | NC_001347.2 | + | 148900 | 0.66 | 0.999346 |
Target: 5'- cGCCGUgcucUUCUucgaCUCGcCCGaaaaCGUGUCGc -3' miRNA: 3'- -CGGUAa---AAGA----GAGCaGGCg---GUACAGC- -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 148556 | 0.66 | 0.999026 |
Target: 5'- uGUCAgc--CUCUCacgGUCCGCUAUGUUu -3' miRNA: 3'- -CGGUaaaaGAGAG---CAGGCGGUACAGc -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 189645 | 0.67 | 0.997594 |
Target: 5'- aGCCGUcagcCUCggCGUCCGUUuUGUCGc -3' miRNA: 3'- -CGGUAaaa-GAGa-GCAGGCGGuACAGC- -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 176372 | 0.68 | 0.996661 |
Target: 5'- cGCCGUgacgUCcgCUCacgGUCCGUUAUGUCc -3' miRNA: 3'- -CGGUAaa--AGa-GAG---CAGGCGGUACAGc -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 137726 | 0.68 | 0.996661 |
Target: 5'- cGCCAcaUUCgaugguguacgCUCG-CCGCCAgaUGUCGu -3' miRNA: 3'- -CGGUaaAAGa----------GAGCaGGCGGU--ACAGC- -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 17115 | 0.69 | 0.989539 |
Target: 5'- cGCCAUgc-CggUCGUCCGCC--GUCGg -3' miRNA: 3'- -CGGUAaaaGagAGCAGGCGGuaCAGC- -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 112176 | 0.7 | 0.984906 |
Target: 5'- uGCCGUgggugUUUCUCcUCCGCCAcucGUCa -3' miRNA: 3'- -CGGUAaa---AGAGAGcAGGCGGUa--CAGc -5' |
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1634 | 3' | -50.4 | NC_001347.2 | + | 134559 | 1.13 | 0.009188 |
Target: 5'- cGCCAUUUUCUCUCGUCCGCCAUGUCGg -3' miRNA: 3'- -CGGUAAAAGAGAGCAGGCGGUACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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