miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1634 5' -54.9 NC_001347.2 + 191784 0.66 0.973024
Target:  5'- uGGCGGCAcagccgcaGGCGcucugccaguuGGCGAGGGAuACCGUc -3'
miRNA:   3'- -UUGCCGUa-------CUGC-----------UCGCUCUCU-UGGCA- -5'
1634 5' -54.9 NC_001347.2 + 81830 0.66 0.970249
Target:  5'- aGACGG---GACGGGCGGGA-AACCGg -3'
miRNA:   3'- -UUGCCguaCUGCUCGCUCUcUUGGCa -5'
1634 5' -54.9 NC_001347.2 + 157426 0.66 0.970249
Target:  5'- -uCGGCAaGcCGAGCGGGAG-GCgGUg -3'
miRNA:   3'- uuGCCGUaCuGCUCGCUCUCuUGgCA- -5'
1634 5' -54.9 NC_001347.2 + 164625 0.66 0.970249
Target:  5'- uGACGGCAuggaUGAUGAGCugcuGGAGAcgAUCGg -3'
miRNA:   3'- -UUGCCGU----ACUGCUCGc---UCUCU--UGGCa -5'
1634 5' -54.9 NC_001347.2 + 6688 0.66 0.966344
Target:  5'- aGGCGGaaacacaGACGAauacucggggggcuGCGAGGGAACCGc -3'
miRNA:   3'- -UUGCCgua----CUGCU--------------CGCUCUCUUGGCa -5'
1634 5' -54.9 NC_001347.2 + 90220 0.66 0.964098
Target:  5'- aGACGGCGUGGCG-GCGucguuuuucGGAGCgCGUc -3'
miRNA:   3'- -UUGCCGUACUGCuCGCuc-------UCUUG-GCA- -5'
1634 5' -54.9 NC_001347.2 + 152412 0.66 0.96071
Target:  5'- aGGCGGCGUGGacUGGGaCGAGgaggaGGGGCCGc -3'
miRNA:   3'- -UUGCCGUACU--GCUC-GCUC-----UCUUGGCa -5'
1634 5' -54.9 NC_001347.2 + 107434 0.67 0.953286
Target:  5'- cGCGGCG-GACGAGgGAcugGAGGugCGc -3'
miRNA:   3'- uUGCCGUaCUGCUCgCU---CUCUugGCa -5'
1634 5' -54.9 NC_001347.2 + 26577 0.67 0.949241
Target:  5'- cAACGGCGUGGCu--UGGGAGcACCGUc -3'
miRNA:   3'- -UUGCCGUACUGcucGCUCUCuUGGCA- -5'
1634 5' -54.9 NC_001347.2 + 63052 0.67 0.949241
Target:  5'- cGGCGGCGUcAUGGGUGgcGGAGGACUGc -3'
miRNA:   3'- -UUGCCGUAcUGCUCGC--UCUCUUGGCa -5'
1634 5' -54.9 NC_001347.2 + 148601 0.67 0.940471
Target:  5'- cGGCGGCGUGACcGGCGGugcggucgcGGGuGGCCGg -3'
miRNA:   3'- -UUGCCGUACUGcUCGCU---------CUC-UUGGCa -5'
1634 5' -54.9 NC_001347.2 + 2211 0.67 0.93574
Target:  5'- cGAUGGCGgguccGGCG-GCGucGGGGACCGUg -3'
miRNA:   3'- -UUGCCGUa----CUGCuCGCu-CUCUUGGCA- -5'
1634 5' -54.9 NC_001347.2 + 177661 0.68 0.920152
Target:  5'- uAACGGag-GACacaGAGCGGGAGGACaCGg -3'
miRNA:   3'- -UUGCCguaCUG---CUCGCUCUCUUG-GCa -5'
1634 5' -54.9 NC_001347.2 + 10326 0.68 0.920152
Target:  5'- uGCGGCG-GACGcGUGAGAGAggAUCGa -3'
miRNA:   3'- uUGCCGUaCUGCuCGCUCUCU--UGGCa -5'
1634 5' -54.9 NC_001347.2 + 136075 0.68 0.908597
Target:  5'- gGGCGGUggGACGGGCccgcGGAcGGACCGg -3'
miRNA:   3'- -UUGCCGuaCUGCUCGc---UCU-CUUGGCa -5'
1634 5' -54.9 NC_001347.2 + 113639 0.68 0.908597
Target:  5'- -cCGGC-UGGaGAGCGAGAG-GCCGg -3'
miRNA:   3'- uuGCCGuACUgCUCGCUCUCuUGGCa -5'
1634 5' -54.9 NC_001347.2 + 140763 0.68 0.908597
Target:  5'- uGCGGCucaucgaccccGUGACGGGCGAGGauACCu- -3'
miRNA:   3'- uUGCCG-----------UACUGCUCGCUCUcuUGGca -5'
1634 5' -54.9 NC_001347.2 + 80308 0.69 0.868512
Target:  5'- gGACGGCAaGGCgGAG-GAGAGAACgGa -3'
miRNA:   3'- -UUGCCGUaCUG-CUCgCUCUCUUGgCa -5'
1634 5' -54.9 NC_001347.2 + 36301 0.7 0.837597
Target:  5'- uGCGGgGUGGugcuCGAGCGAGAGcACUGa -3'
miRNA:   3'- uUGCCgUACU----GCUCGCUCUCuUGGCa -5'
1634 5' -54.9 NC_001347.2 + 13953 0.73 0.669931
Target:  5'- cGCGGgGUGGCGaAGCGGGAGcGCUGa -3'
miRNA:   3'- uUGCCgUACUGC-UCGCUCUCuUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.