miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 51160 0.66 0.667913
Target:  5'- -aGGCGaucgaGACGGUCGCCGagcacgcGCCGa -3'
miRNA:   3'- agUCGUg----CUGCUAGCGGCgcua---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 58121 0.66 0.667913
Target:  5'- -gGGUucucguCGGCGGUCGUCGuCGAgccGCCGu -3'
miRNA:   3'- agUCGu-----GCUGCUAGCGGC-GCUa--CGGC- -5'
16340 3' -57.2 NC_004084.1 + 20889 0.66 0.667913
Target:  5'- gUCAGCccCGGCaGUCGgaGCGGUGaCCGg -3'
miRNA:   3'- -AGUCGu-GCUGcUAGCggCGCUAC-GGC- -5'
16340 3' -57.2 NC_004084.1 + 39556 0.66 0.667913
Target:  5'- cCAGCGCGAuCGAcUCGaCCGgGAccGUCGa -3'
miRNA:   3'- aGUCGUGCU-GCU-AGC-GGCgCUa-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 4033 0.66 0.667913
Target:  5'- -uGGaACGGCGAUCGCgucagaGUGAucUGCCGa -3'
miRNA:   3'- agUCgUGCUGCUAGCGg-----CGCU--ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 50172 0.66 0.667913
Target:  5'- gUCAGCgGCGuCGAUCGUCuCGAcGUCGc -3'
miRNA:   3'- -AGUCG-UGCuGCUAGCGGcGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 18842 0.66 0.667913
Target:  5'- -uGGCGCGGCuuUCGUCGaCGGUcCCGg -3'
miRNA:   3'- agUCGUGCUGcuAGCGGC-GCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 37338 0.66 0.664703
Target:  5'- uUCGGCGauccCGACGA-CGCCcagcucgaagcacuGCGGUGgCCGc -3'
miRNA:   3'- -AGUCGU----GCUGCUaGCGG--------------CGCUAC-GGC- -5'
16340 3' -57.2 NC_004084.1 + 28980 0.66 0.66149
Target:  5'- cCAGCGCG-CGAcCGacgucggccugaugaCCGCGAUGCa- -3'
miRNA:   3'- aGUCGUGCuGCUaGC---------------GGCGCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 55826 0.66 0.657203
Target:  5'- uUCAcCuCGGCG-UCGuCCGgGAUGCCGu -3'
miRNA:   3'- -AGUcGuGCUGCuAGC-GGCgCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 23583 0.66 0.657203
Target:  5'- --cGUACGACGA-CGUCGUGcuccGCCGg -3'
miRNA:   3'- aguCGUGCUGCUaGCGGCGCua--CGGC- -5'
16340 3' -57.2 NC_004084.1 + 2861 0.66 0.657203
Target:  5'- -aGGC-CGACGAguUCGUCGCG--GCCa -3'
miRNA:   3'- agUCGuGCUGCU--AGCGGCGCuaCGGc -5'
16340 3' -57.2 NC_004084.1 + 54365 0.66 0.650765
Target:  5'- cCAGCugG-CGGUCGgcagaucacucugaCGCGAUcGCCGu -3'
miRNA:   3'- aGUCGugCuGCUAGCg-------------GCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 39310 0.66 0.64647
Target:  5'- -gAGUccAC-ACGGUagcCGCCGCGGUGCUGa -3'
miRNA:   3'- agUCG--UGcUGCUA---GCGGCGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 56992 0.66 0.645396
Target:  5'- gCGGCcgaggACGGCGA-CGCCgagaaugGCGAcGCCGg -3'
miRNA:   3'- aGUCG-----UGCUGCUaGCGG-------CGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 22582 0.66 0.635724
Target:  5'- aUCAGCuaccACGACG-UCGCCGaCGAga-CGg -3'
miRNA:   3'- -AGUCG----UGCUGCuAGCGGC-GCUacgGC- -5'
16340 3' -57.2 NC_004084.1 + 47019 0.66 0.635724
Target:  5'- -gAGgACGucGCGAUCGauGaCGAUGCCGg -3'
miRNA:   3'- agUCgUGC--UGCUAGCggC-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 55918 0.66 0.624976
Target:  5'- -gGGCugGaucgggaauGCGAUCGUCGCGAacaCCGg -3'
miRNA:   3'- agUCGugC---------UGCUAGCGGCGCUac-GGC- -5'
16340 3' -57.2 NC_004084.1 + 39619 0.66 0.624976
Target:  5'- cCGGCgacguccucgACGAguCGAUCGUaCGCGAcGCCGa -3'
miRNA:   3'- aGUCG----------UGCU--GCUAGCG-GCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 31391 0.66 0.614233
Target:  5'- uUCAGCcCGGCGAagGCCG--GUGUCGu -3'
miRNA:   3'- -AGUCGuGCUGCUagCGGCgcUACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.