miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 20889 0.66 0.667913
Target:  5'- gUCAGCccCGGCaGUCGgaGCGGUGaCCGg -3'
miRNA:   3'- -AGUCGu-GCUGcUAGCggCGCUAC-GGC- -5'
16340 3' -57.2 NC_004084.1 + 39619 0.66 0.624976
Target:  5'- cCGGCgacguccucgACGAguCGAUCGUaCGCGAcGCCGa -3'
miRNA:   3'- aGUCG----------UGCU--GCUAGCG-GCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 9433 0.67 0.560911
Target:  5'- --cGCGCGAUGG--GCCGCGAcGUCGa -3'
miRNA:   3'- aguCGUGCUGCUagCGGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 52092 0.67 0.582129
Target:  5'- --cGC-CGACGuuacCGCCGgGAUGUCGa -3'
miRNA:   3'- aguCGuGCUGCua--GCGGCgCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 17281 0.67 0.603506
Target:  5'- cUCGGUggaGGCGGUgGCgGCGGUGgCGg -3'
miRNA:   3'- -AGUCGug-CUGCUAgCGgCGCUACgGC- -5'
16340 3' -57.2 NC_004084.1 + 31118 0.67 0.603506
Target:  5'- cCAGgAUGAUGAacagcggCGCCGCGAUcGUCa -3'
miRNA:   3'- aGUCgUGCUGCUa------GCGGCGCUA-CGGc -5'
16340 3' -57.2 NC_004084.1 + 27847 0.67 0.582129
Target:  5'- cCGGUucgcCGACcGUCGCCGCGAugaggauguucgUGUCGa -3'
miRNA:   3'- aGUCGu---GCUGcUAGCGGCGCU------------ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 19126 0.67 0.582129
Target:  5'- cUCGGUgcuCGACGAUCGaguCCGCGAcGCg- -3'
miRNA:   3'- -AGUCGu--GCUGCUAGC---GGCGCUaCGgc -5'
16340 3' -57.2 NC_004084.1 + 11095 0.67 0.591733
Target:  5'- gUCGGCgACGA-GAUCGCCGUucgcggcucgaagGAUGUCc -3'
miRNA:   3'- -AGUCG-UGCUgCUAGCGGCG-------------CUACGGc -5'
16340 3' -57.2 NC_004084.1 + 4160 0.67 0.560911
Target:  5'- aCGGC-CGAUGA-CGUCGCGGuUGCuCGg -3'
miRNA:   3'- aGUCGuGCUGCUaGCGGCGCU-ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 31522 0.67 0.603506
Target:  5'- cUAuCGCGAUGGaUGCCGCGAUcGCCu -3'
miRNA:   3'- aGUcGUGCUGCUaGCGGCGCUA-CGGc -5'
16340 3' -57.2 NC_004084.1 + 1857 0.67 0.571497
Target:  5'- gCAGCGCGACGGacgacgUCGCCuccUGGacUGCCa -3'
miRNA:   3'- aGUCGUGCUGCU------AGCGGc--GCU--ACGGc -5'
16340 3' -57.2 NC_004084.1 + 290 0.67 0.603506
Target:  5'- gCGGCucgACGACGAcCGCCGaCGAgaacCCGa -3'
miRNA:   3'- aGUCG---UGCUGCUaGCGGC-GCUac--GGC- -5'
16340 3' -57.2 NC_004084.1 + 21818 0.67 0.582129
Target:  5'- gUCAGCGuCGACGGUgaggCGCUGgaCGAUGCa- -3'
miRNA:   3'- -AGUCGU-GCUGCUA----GCGGC--GCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 36935 0.67 0.571497
Target:  5'- --cGCAaccgaGGCGAUCGCCGCccucgagggcGA-GCCGg -3'
miRNA:   3'- aguCGUg----CUGCUAGCGGCG----------CUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 41184 0.67 0.560911
Target:  5'- gUCAGCugGgACGAacacgaCGcCCGCGAcGCUGg -3'
miRNA:   3'- -AGUCGugC-UGCUa-----GC-GGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 31198 0.68 0.539911
Target:  5'- aCAGCGCGuCGAcgUCGUCGCGAa-CCu -3'
miRNA:   3'- aGUCGUGCuGCU--AGCGGCGCUacGGc -5'
16340 3' -57.2 NC_004084.1 + 47758 0.68 0.55038
Target:  5'- gUUGGCGCGAuccaucauCGA-CGCCGCguuGAUGUCGg -3'
miRNA:   3'- -AGUCGUGCU--------GCUaGCGGCG---CUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 51239 0.68 0.55038
Target:  5'- gCAGCuCGACguccgGAUCGCUGCGA--CCGa -3'
miRNA:   3'- aGUCGuGCUG-----CUAGCGGCGCUacGGC- -5'
16340 3' -57.2 NC_004084.1 + 36416 0.68 0.52951
Target:  5'- aCGGUcuuuCGACGAUCGCCGCaGAccUGUaCGa -3'
miRNA:   3'- aGUCGu---GCUGCUAGCGGCG-CU--ACG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.