miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 14897 0.7 0.434226
Target:  5'- gUCAGCGCGAUGAagacgugcuccggguUCGCCuCGAUcugGUCGa -3'
miRNA:   3'- -AGUCGUGCUGCU---------------AGCGGcGCUA---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 2886 0.69 0.446566
Target:  5'- cCAGCGCGAuCGcggaggaucccaucAUCaaCGCGGUGCCGa -3'
miRNA:   3'- aGUCGUGCU-GC--------------UAGcgGCGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 52952 0.69 0.449441
Target:  5'- gUCGGCGuCGucgUGAUCGUCGCGAgugcGCUGg -3'
miRNA:   3'- -AGUCGU-GCu--GCUAGCGGCGCUa---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 26856 0.69 0.459097
Target:  5'- cUCAGUuuCGACGAUUGUcgguagCGCGAUGUCc -3'
miRNA:   3'- -AGUCGu-GCUGCUAGCG------GCGCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 54639 0.69 0.488707
Target:  5'- uUUGGUAC--CGAUCGCCaGCGAcGCCGa -3'
miRNA:   3'- -AGUCGUGcuGCUAGCGG-CGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 20023 0.69 0.488707
Target:  5'- aUCGGCgcucgaggACGACGAUCGCgucucgucaGuCGAUGCUGu -3'
miRNA:   3'- -AGUCG--------UGCUGCUAGCGg--------C-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 907 0.69 0.488707
Target:  5'- gUCGGCGuCGuCGGaguUCGCUGCGGccUGCUGg -3'
miRNA:   3'- -AGUCGU-GCuGCU---AGCGGCGCU--ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 35478 0.69 0.488707
Target:  5'- -aGGUcgagGCGGCGAUCGCCGaGAUcCCGa -3'
miRNA:   3'- agUCG----UGCUGCUAGCGGCgCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 1266 0.68 0.498776
Target:  5'- uUCGGuCugGGUGAUCGCCcgGgGAUGCCc -3'
miRNA:   3'- -AGUC-GugCUGCUAGCGG--CgCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 7099 0.68 0.498776
Target:  5'- -gGGCGCacuCGAUCGCCuCGGUcGCCGu -3'
miRNA:   3'- agUCGUGcu-GCUAGCGGcGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 17933 0.68 0.519183
Target:  5'- gCAGguCGAUcaGGUCGUCGCGuucgagGCCGu -3'
miRNA:   3'- aGUCguGCUG--CUAGCGGCGCua----CGGC- -5'
16340 3' -57.2 NC_004084.1 + 21482 0.68 0.519183
Target:  5'- -gAGgGCGGCGAUCGCCuCGGUugcGUCGu -3'
miRNA:   3'- agUCgUGCUGCUAGCGGcGCUA---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 9074 0.68 0.519183
Target:  5'- --cGUuCGGaGAUCGCCGCGGUacGCCGa -3'
miRNA:   3'- aguCGuGCUgCUAGCGGCGCUA--CGGC- -5'
16340 3' -57.2 NC_004084.1 + 36416 0.68 0.52951
Target:  5'- aCGGUcuuuCGACGAUCGCCGCaGAccUGUaCGa -3'
miRNA:   3'- aGUCGu---GCUGCUAGCGGCG-CU--ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 33104 0.68 0.52951
Target:  5'- -gGGCGCGACGGcgGCCucuGCGGcuacUGCCGg -3'
miRNA:   3'- agUCGUGCUGCUagCGG---CGCU----ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 4920 0.68 0.538868
Target:  5'- --cGCACGACGAcuUCGCCGUcgacguacugGAUgacguccGCCGg -3'
miRNA:   3'- aguCGUGCUGCU--AGCGGCG----------CUA-------CGGC- -5'
16340 3' -57.2 NC_004084.1 + 56314 0.68 0.539911
Target:  5'- gUCcGUucuCGACGAggauUCGCaggcgaGCGAUGCCGu -3'
miRNA:   3'- -AGuCGu--GCUGCU----AGCGg-----CGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 381 0.68 0.539911
Target:  5'- -gAGCcCGGgGAcgUCGCCGCcGAUGUCGc -3'
miRNA:   3'- agUCGuGCUgCU--AGCGGCG-CUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 31198 0.68 0.539911
Target:  5'- aCAGCGCGuCGAcgUCGUCGCGAa-CCu -3'
miRNA:   3'- aGUCGUGCuGCU--AGCGGCGCUacGGc -5'
16340 3' -57.2 NC_004084.1 + 47758 0.68 0.55038
Target:  5'- gUUGGCGCGAuccaucauCGA-CGCCGCguuGAUGUCGg -3'
miRNA:   3'- -AGUCGUGCU--------GCUaGCGGCG---CUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.