miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 14897 0.7 0.434226
Target:  5'- gUCAGCGCGAUGAagacgugcuccggguUCGCCuCGAUcugGUCGa -3'
miRNA:   3'- -AGUCGUGCUGCU---------------AGCGGcGCUA---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 16101 0.73 0.290053
Target:  5'- cUCGuCcCGACGGUCGUCGCGAUcgucGCCGa -3'
miRNA:   3'- -AGUcGuGCUGCUAGCGGCGCUA----CGGC- -5'
16340 3' -57.2 NC_004084.1 + 16509 0.73 0.256215
Target:  5'- aCAGCA-GGCGAucgcgUCGCCGCGGUcGUCGu -3'
miRNA:   3'- aGUCGUgCUGCU-----AGCGGCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 16937 0.76 0.164835
Target:  5'- uUCGGCAuCGGCGggCGUCGCGAcGUCGg -3'
miRNA:   3'- -AGUCGU-GCUGCuaGCGGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 17140 0.7 0.385181
Target:  5'- gUCGGCgguucacugaugGgGACGAUCGCCGgCGAcGUCGa -3'
miRNA:   3'- -AGUCG------------UgCUGCUAGCGGC-GCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 17281 0.67 0.603506
Target:  5'- cUCGGUggaGGCGGUgGCgGCGGUGgCGg -3'
miRNA:   3'- -AGUCGug-CUGCUAgCGgCGCUACgGC- -5'
16340 3' -57.2 NC_004084.1 + 17933 0.68 0.519183
Target:  5'- gCAGguCGAUcaGGUCGUCGCGuucgagGCCGu -3'
miRNA:   3'- aGUCguGCUG--CUAGCGGCGCua----CGGC- -5'
16340 3' -57.2 NC_004084.1 + 18559 0.76 0.164835
Target:  5'- cUCAGCGugcuCGACGG-CGCCGCGGccGCCGa -3'
miRNA:   3'- -AGUCGU----GCUGCUaGCGGCGCUa-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 18842 0.66 0.667913
Target:  5'- -uGGCGCGGCuuUCGUCGaCGGUcCCGg -3'
miRNA:   3'- agUCGUGCUGcuAGCGGC-GCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 19126 0.67 0.582129
Target:  5'- cUCGGUgcuCGACGAUCGaguCCGCGAcGCg- -3'
miRNA:   3'- -AGUCGu--GCUGCUAGC---GGCGCUaCGgc -5'
16340 3' -57.2 NC_004084.1 + 20023 0.69 0.488707
Target:  5'- aUCGGCgcucgaggACGACGAUCGCgucucgucaGuCGAUGCUGu -3'
miRNA:   3'- -AGUCG--------UGCUGCUAGCGg--------C-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 20889 0.66 0.667913
Target:  5'- gUCAGCccCGGCaGUCGgaGCGGUGaCCGg -3'
miRNA:   3'- -AGUCGu-GCUGcUAGCggCGCUAC-GGC- -5'
16340 3' -57.2 NC_004084.1 + 21077 0.71 0.343157
Target:  5'- -gAGCugGGCG-UCGUCGgGAUcGCCGa -3'
miRNA:   3'- agUCGugCUGCuAGCGGCgCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 21482 0.68 0.519183
Target:  5'- -gAGgGCGGCGAUCGCCuCGGUugcGUCGu -3'
miRNA:   3'- agUCgUGCUGCUAGCGGcGCUA---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 21818 0.67 0.582129
Target:  5'- gUCAGCGuCGACGGUgaggCGCUGgaCGAUGCa- -3'
miRNA:   3'- -AGUCGU-GCUGCUA----GCGGC--GCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 22582 0.66 0.635724
Target:  5'- aUCAGCuaccACGACG-UCGCCGaCGAga-CGg -3'
miRNA:   3'- -AGUCG----UGCUGCuAGCGGC-GCUacgGC- -5'
16340 3' -57.2 NC_004084.1 + 23583 0.66 0.657203
Target:  5'- --cGUACGACGA-CGUCGUGcuccGCCGg -3'
miRNA:   3'- aguCGUGCUGCUaGCGGCGCua--CGGC- -5'
16340 3' -57.2 NC_004084.1 + 26856 0.69 0.459097
Target:  5'- cUCAGUuuCGACGAUUGUcgguagCGCGAUGUCc -3'
miRNA:   3'- -AGUCGu-GCUGCUAGCG------GCGCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 27288 0.66 0.614233
Target:  5'- --cGC-UGACGAUCGCgGCGccGCUGu -3'
miRNA:   3'- aguCGuGCUGCUAGCGgCGCuaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 27847 0.67 0.582129
Target:  5'- cCGGUucgcCGACcGUCGCCGCGAugaggauguucgUGUCGa -3'
miRNA:   3'- aGUCGu---GCUGcUAGCGGCGCU------------ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.