miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 28177 0.7 0.421162
Target:  5'- cUCGGCcuguuCGACG-UCGCCGCGGacaucGCCu -3'
miRNA:   3'- -AGUCGu----GCUGCuAGCGGCGCUa----CGGc -5'
16340 3' -57.2 NC_004084.1 + 28980 0.66 0.66149
Target:  5'- cCAGCGCG-CGAcCGacgucggccugaugaCCGCGAUGCa- -3'
miRNA:   3'- aGUCGUGCuGCUaGC---------------GGCGCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 29182 0.7 0.385181
Target:  5'- -gGGCGCGACGAguacUCGCCcGCGAacaacGUCGa -3'
miRNA:   3'- agUCGUGCUGCU----AGCGG-CGCUa----CGGC- -5'
16340 3' -57.2 NC_004084.1 + 31118 0.67 0.603506
Target:  5'- cCAGgAUGAUGAacagcggCGCCGCGAUcGUCa -3'
miRNA:   3'- aGUCgUGCUGCUa------GCGGCGCUA-CGGc -5'
16340 3' -57.2 NC_004084.1 + 31198 0.68 0.539911
Target:  5'- aCAGCGCGuCGAcgUCGUCGCGAa-CCu -3'
miRNA:   3'- aGUCGUGCuGCU--AGCGGCGCUacGGc -5'
16340 3' -57.2 NC_004084.1 + 31391 0.66 0.614233
Target:  5'- uUCAGCcCGGCGAagGCCG--GUGUCGu -3'
miRNA:   3'- -AGUCGuGCUGCUagCGGCgcUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 31522 0.67 0.603506
Target:  5'- cUAuCGCGAUGGaUGCCGCGAUcGCCu -3'
miRNA:   3'- aGUcGUGCUGCUaGCGGCGCUA-CGGc -5'
16340 3' -57.2 NC_004084.1 + 33104 0.68 0.52951
Target:  5'- -gGGCGCGACGGcgGCCucuGCGGcuacUGCCGg -3'
miRNA:   3'- agUCGUGCUGCUagCGG---CGCU----ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 35478 0.69 0.488707
Target:  5'- -aGGUcgagGCGGCGAUCGCCGaGAUcCCGa -3'
miRNA:   3'- agUCG----UGCUGCUAGCGGCgCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 36416 0.68 0.52951
Target:  5'- aCGGUcuuuCGACGAUCGCCGCaGAccUGUaCGa -3'
miRNA:   3'- aGUCGu---GCUGCUAGCGGCG-CU--ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 36935 0.67 0.571497
Target:  5'- --cGCAaccgaGGCGAUCGCCGCccucgagggcGA-GCCGg -3'
miRNA:   3'- aguCGUg----CUGCUAGCGGCG----------CUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 37338 0.66 0.664703
Target:  5'- uUCGGCGauccCGACGA-CGCCcagcucgaagcacuGCGGUGgCCGc -3'
miRNA:   3'- -AGUCGU----GCUGCUaGCGG--------------CGCUAC-GGC- -5'
16340 3' -57.2 NC_004084.1 + 39310 0.66 0.64647
Target:  5'- -gAGUccAC-ACGGUagcCGCCGCGGUGCUGa -3'
miRNA:   3'- agUCG--UGcUGCUA---GCGGCGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 39556 0.66 0.667913
Target:  5'- cCAGCGCGAuCGAcUCGaCCGgGAccGUCGa -3'
miRNA:   3'- aGUCGUGCU-GCU-AGC-GGCgCUa-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 39619 0.66 0.624976
Target:  5'- cCGGCgacguccucgACGAguCGAUCGUaCGCGAcGCCGa -3'
miRNA:   3'- aGUCG----------UGCU--GCUAGCG-GCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 41184 0.67 0.560911
Target:  5'- gUCAGCugGgACGAacacgaCGcCCGCGAcGCUGg -3'
miRNA:   3'- -AGUCGugC-UGCUa-----GC-GGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 41911 0.71 0.343157
Target:  5'- gCGGCGCG-CGAUCGCCuGCuGUGgCGa -3'
miRNA:   3'- aGUCGUGCuGCUAGCGG-CGcUACgGC- -5'
16340 3' -57.2 NC_004084.1 + 46571 0.7 0.421162
Target:  5'- cUCGGCAuCGGC-AUCGCgGCGAUcGUCGu -3'
miRNA:   3'- -AGUCGU-GCUGcUAGCGgCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 47019 0.66 0.635724
Target:  5'- -gAGgACGucGCGAUCGauGaCGAUGCCGg -3'
miRNA:   3'- agUCgUGC--UGCUAGCggC-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 47758 0.68 0.55038
Target:  5'- gUUGGCGCGAuccaucauCGA-CGCCGCguuGAUGUCGg -3'
miRNA:   3'- -AGUCGUGCU--------GCUaGCGGCG---CUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.