miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 17281 0.67 0.603506
Target:  5'- cUCGGUggaGGCGGUgGCgGCGGUGgCGg -3'
miRNA:   3'- -AGUCGug-CUGCUAgCGgCGCUACgGC- -5'
16340 3' -57.2 NC_004084.1 + 31198 0.68 0.539911
Target:  5'- aCAGCGCGuCGAcgUCGUCGCGAa-CCu -3'
miRNA:   3'- aGUCGUGCuGCU--AGCGGCGCUacGGc -5'
16340 3' -57.2 NC_004084.1 + 51239 0.68 0.55038
Target:  5'- gCAGCuCGACguccgGAUCGCUGCGA--CCGa -3'
miRNA:   3'- aGUCGuGCUG-----CUAGCGGCGCUacGGC- -5'
16340 3' -57.2 NC_004084.1 + 41184 0.67 0.560911
Target:  5'- gUCAGCugGgACGAacacgaCGcCCGCGAcGCUGg -3'
miRNA:   3'- -AGUCGugC-UGCUa-----GC-GGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 9433 0.67 0.560911
Target:  5'- --cGCGCGAUGG--GCCGCGAcGUCGa -3'
miRNA:   3'- aguCGUGCUGCUagCGGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 1857 0.67 0.571497
Target:  5'- gCAGCGCGACGGacgacgUCGCCuccUGGacUGCCa -3'
miRNA:   3'- aGUCGUGCUGCU------AGCGGc--GCU--ACGGc -5'
16340 3' -57.2 NC_004084.1 + 36935 0.67 0.571497
Target:  5'- --cGCAaccgaGGCGAUCGCCGCccucgagggcGA-GCCGg -3'
miRNA:   3'- aguCGUg----CUGCUAGCGGCG----------CUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 21818 0.67 0.582129
Target:  5'- gUCAGCGuCGACGGUgaggCGCUGgaCGAUGCa- -3'
miRNA:   3'- -AGUCGU-GCUGCUA----GCGGC--GCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 290 0.67 0.603506
Target:  5'- gCGGCucgACGACGAcCGCCGaCGAgaacCCGa -3'
miRNA:   3'- aGUCG---UGCUGCUaGCGGC-GCUac--GGC- -5'
16340 3' -57.2 NC_004084.1 + 36416 0.68 0.52951
Target:  5'- aCGGUcuuuCGACGAUCGCCGCaGAccUGUaCGa -3'
miRNA:   3'- aGUCGu---GCUGCUAGCGGCG-CU--ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 35478 0.69 0.488707
Target:  5'- -aGGUcgagGCGGCGAUCGCCGaGAUcCCGa -3'
miRNA:   3'- agUCG----UGCUGCUAGCGGCgCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 20023 0.69 0.488707
Target:  5'- aUCGGCgcucgaggACGACGAUCGCgucucgucaGuCGAUGCUGu -3'
miRNA:   3'- -AGUCG--------UGCUGCUAGCGg--------C-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 52122 0.72 0.308992
Target:  5'- cCAGCACGGCGGUuacgccgacuucugCGUCGUGAUcauggacGCCGa -3'
miRNA:   3'- aGUCGUGCUGCUA--------------GCGGCGCUA-------CGGC- -5'
16340 3' -57.2 NC_004084.1 + 41911 0.71 0.343157
Target:  5'- gCGGCGCG-CGAUCGCCuGCuGUGgCGa -3'
miRNA:   3'- aGUCGUGCuGCUAGCGG-CGcUACgGC- -5'
16340 3' -57.2 NC_004084.1 + 17140 0.7 0.385181
Target:  5'- gUCGGCgguucacugaugGgGACGAUCGCCGgCGAcGUCGa -3'
miRNA:   3'- -AGUCG------------UgCUGCUAGCGGC-GCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 56123 0.7 0.411977
Target:  5'- -gAGCACGACcagacCCGCGAUGCCc -3'
miRNA:   3'- agUCGUGCUGcuagcGGCGCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 7408 0.7 0.411977
Target:  5'- -gAGCAaGGCGAUCGacgacgaggGCGAUGCCGa -3'
miRNA:   3'- agUCGUgCUGCUAGCgg-------CGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 46571 0.7 0.421162
Target:  5'- cUCGGCAuCGGC-AUCGCgGCGAUcGUCGu -3'
miRNA:   3'- -AGUCGU-GCUGcUAGCGgCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 28177 0.7 0.421162
Target:  5'- cUCGGCcuguuCGACG-UCGCCGCGGacaucGCCu -3'
miRNA:   3'- -AGUCGu----GCUGCuAGCGGCGCUa----CGGc -5'
16340 3' -57.2 NC_004084.1 + 26856 0.69 0.459097
Target:  5'- cUCAGUuuCGACGAUUGUcgguagCGCGAUGUCc -3'
miRNA:   3'- -AGUCGu-GCUGCUAGCG------GCGCUACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.