miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 17140 0.7 0.385181
Target:  5'- gUCGGCgguucacugaugGgGACGAUCGCCGgCGAcGUCGa -3'
miRNA:   3'- -AGUCG------------UgCUGCUAGCGGC-GCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 56123 0.7 0.411977
Target:  5'- -gAGCACGACcagacCCGCGAUGCCc -3'
miRNA:   3'- agUCGUGCUGcuagcGGCGCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 7408 0.7 0.411977
Target:  5'- -gAGCAaGGCGAUCGacgacgaggGCGAUGCCGa -3'
miRNA:   3'- agUCGUgCUGCUAGCgg-------CGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 46571 0.7 0.421162
Target:  5'- cUCGGCAuCGGC-AUCGCgGCGAUcGUCGu -3'
miRNA:   3'- -AGUCGU-GCUGcUAGCGgCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 28177 0.7 0.421162
Target:  5'- cUCGGCcuguuCGACG-UCGCCGCGGacaucGCCu -3'
miRNA:   3'- -AGUCGu----GCUGCuAGCGGCGCUa----CGGc -5'
16340 3' -57.2 NC_004084.1 + 26856 0.69 0.459097
Target:  5'- cUCAGUuuCGACGAUUGUcgguagCGCGAUGUCc -3'
miRNA:   3'- -AGUCGu-GCUGCUAGCG------GCGCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 41184 0.67 0.560911
Target:  5'- gUCAGCugGgACGAacacgaCGcCCGCGAcGCUGg -3'
miRNA:   3'- -AGUCGugC-UGCUa-----GC-GGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 51239 0.68 0.55038
Target:  5'- gCAGCuCGACguccgGAUCGCUGCGA--CCGa -3'
miRNA:   3'- aGUCGuGCUG-----CUAGCGGCGCUacGGC- -5'
16340 3' -57.2 NC_004084.1 + 31198 0.68 0.539911
Target:  5'- aCAGCGCGuCGAcgUCGUCGCGAa-CCu -3'
miRNA:   3'- aGUCGUGCuGCU--AGCGGCGCUacGGc -5'
16340 3' -57.2 NC_004084.1 + 36416 0.68 0.52951
Target:  5'- aCGGUcuuuCGACGAUCGCCGCaGAccUGUaCGa -3'
miRNA:   3'- aGUCGu---GCUGCUAGCGGCG-CU--ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 35478 0.69 0.488707
Target:  5'- -aGGUcgagGCGGCGAUCGCCGaGAUcCCGa -3'
miRNA:   3'- agUCG----UGCUGCUAGCGGCgCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 20023 0.69 0.488707
Target:  5'- aUCGGCgcucgaggACGACGAUCGCgucucgucaGuCGAUGCUGu -3'
miRNA:   3'- -AGUCG--------UGCUGCUAGCGg--------C-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 23583 0.66 0.657203
Target:  5'- --cGUACGACGA-CGUCGUGcuccGCCGg -3'
miRNA:   3'- aguCGUGCUGCUaGCGGCGCua--CGGC- -5'
16340 3' -57.2 NC_004084.1 + 55826 0.66 0.657203
Target:  5'- uUCAcCuCGGCG-UCGuCCGgGAUGCCGu -3'
miRNA:   3'- -AGUcGuGCUGCuAGC-GGCgCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 28980 0.66 0.66149
Target:  5'- cCAGCGCG-CGAcCGacgucggccugaugaCCGCGAUGCa- -3'
miRNA:   3'- aGUCGUGCuGCUaGC---------------GGCGCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 4033 0.66 0.667913
Target:  5'- -uGGaACGGCGAUCGCgucagaGUGAucUGCCGa -3'
miRNA:   3'- agUCgUGCUGCUAGCGg-----CGCU--ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 18842 0.66 0.667913
Target:  5'- -uGGCGCGGCuuUCGUCGaCGGUcCCGg -3'
miRNA:   3'- agUCGUGCUGcuAGCGGC-GCUAcGGC- -5'
16340 3' -57.2 NC_004084.1 + 20889 0.66 0.667913
Target:  5'- gUCAGCccCGGCaGUCGgaGCGGUGaCCGg -3'
miRNA:   3'- -AGUCGu-GCUGcUAGCggCGCUAC-GGC- -5'
16340 3' -57.2 NC_004084.1 + 50172 0.66 0.667913
Target:  5'- gUCAGCgGCGuCGAUCGUCuCGAcGUCGc -3'
miRNA:   3'- -AGUCG-UGCuGCUAGCGGcGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 11837 1.09 0.00072
Target:  5'- uUCAGCACGACGAUCGCCGCGAUGCCGa -3'
miRNA:   3'- -AGUCGUGCUGCUAGCGGCGCUACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.