miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 33104 0.68 0.52951
Target:  5'- -gGGCGCGACGGcgGCCucuGCGGcuacUGCCGg -3'
miRNA:   3'- agUCGUGCUGCUagCGG---CGCU----ACGGC- -5'
16340 3' -57.2 NC_004084.1 + 4920 0.68 0.538868
Target:  5'- --cGCACGACGAcuUCGCCGUcgacguacugGAUgacguccGCCGg -3'
miRNA:   3'- aguCGUGCUGCU--AGCGGCG----------CUA-------CGGC- -5'
16340 3' -57.2 NC_004084.1 + 19126 0.67 0.582129
Target:  5'- cUCGGUgcuCGACGAUCGaguCCGCGAcGCg- -3'
miRNA:   3'- -AGUCGu--GCUGCUAGC---GGCGCUaCGgc -5'
16340 3' -57.2 NC_004084.1 + 31118 0.67 0.603506
Target:  5'- cCAGgAUGAUGAacagcggCGCCGCGAUcGUCa -3'
miRNA:   3'- aGUCgUGCUGCUa------GCGGCGCUA-CGGc -5'
16340 3' -57.2 NC_004084.1 + 7230 0.7 0.384307
Target:  5'- cCAGCGCcgaccucGACGAUCGgCGCG-UGCuCGg -3'
miRNA:   3'- aGUCGUG-------CUGCUAGCgGCGCuACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 1266 0.68 0.498776
Target:  5'- uUCGGuCugGGUGAUCGCCcgGgGAUGCCc -3'
miRNA:   3'- -AGUC-GugCUGCUAGCGG--CgCUACGGc -5'
16340 3' -57.2 NC_004084.1 + 56314 0.68 0.539911
Target:  5'- gUCcGUucuCGACGAggauUCGCaggcgaGCGAUGCCGu -3'
miRNA:   3'- -AGuCGu--GCUGCU----AGCGg-----CGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 31522 0.67 0.603506
Target:  5'- cUAuCGCGAUGGaUGCCGCGAUcGCCu -3'
miRNA:   3'- aGUcGUGCUGCUaGCGGCGCUA-CGGc -5'
16340 3' -57.2 NC_004084.1 + 7099 0.68 0.498776
Target:  5'- -gGGCGCacuCGAUCGCCuCGGUcGCCGu -3'
miRNA:   3'- agUCGUGcu-GCUAGCGGcGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 55888 0.66 0.614233
Target:  5'- aCGGCcacccgugcgACGACGAUcCGCCG-GAggaguggGCCGa -3'
miRNA:   3'- aGUCG----------UGCUGCUA-GCGGCgCUa------CGGC- -5'
16340 3' -57.2 NC_004084.1 + 381 0.68 0.539911
Target:  5'- -gAGCcCGGgGAcgUCGCCGCcGAUGUCGc -3'
miRNA:   3'- agUCGuGCUgCU--AGCGGCG-CUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 9074 0.68 0.519183
Target:  5'- --cGUuCGGaGAUCGCCGCGGUacGCCGa -3'
miRNA:   3'- aguCGuGCUgCUAGCGGCGCUA--CGGC- -5'
16340 3' -57.2 NC_004084.1 + 47758 0.68 0.55038
Target:  5'- gUUGGCGCGAuccaucauCGA-CGCCGCguuGAUGUCGg -3'
miRNA:   3'- -AGUCGUGCU--------GCUaGCGGCG---CUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 4160 0.67 0.560911
Target:  5'- aCGGC-CGAUGA-CGUCGCGGuUGCuCGg -3'
miRNA:   3'- aGUCGuGCUGCUaGCGGCGCU-ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 52092 0.67 0.582129
Target:  5'- --cGC-CGACGuuacCGCCGgGAUGUCGa -3'
miRNA:   3'- aguCGuGCUGCua--GCGGCgCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 11095 0.67 0.591733
Target:  5'- gUCGGCgACGA-GAUCGCCGUucgcggcucgaagGAUGUCc -3'
miRNA:   3'- -AGUCG-UGCUgCUAGCGGCG-------------CUACGGc -5'
16340 3' -57.2 NC_004084.1 + 16509 0.73 0.256215
Target:  5'- aCAGCA-GGCGAucgcgUCGCCGCGGUcGUCGu -3'
miRNA:   3'- aGUCGUgCUGCU-----AGCGGCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 8873 0.7 0.382565
Target:  5'- cUCAGCuuuCGAcacgccgaucaccuCGAUCGuCCGUGgAUGCCGa -3'
miRNA:   3'- -AGUCGu--GCU--------------GCUAGC-GGCGC-UACGGC- -5'
16340 3' -57.2 NC_004084.1 + 2886 0.69 0.446566
Target:  5'- cCAGCGCGAuCGcggaggaucccaucAUCaaCGCGGUGCCGa -3'
miRNA:   3'- aGUCGUGCU-GC--------------UAGcgGCGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 907 0.69 0.488707
Target:  5'- gUCGGCGuCGuCGGaguUCGCUGCGGccUGCUGg -3'
miRNA:   3'- -AGUCGU-GCuGCU---AGCGGCGCU--ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.