miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 3' -57.2 NC_004084.1 + 52952 0.69 0.449441
Target:  5'- gUCGGCGuCGucgUGAUCGUCGCGAgugcGCUGg -3'
miRNA:   3'- -AGUCGU-GCu--GCUAGCGGCGCUa---CGGC- -5'
16340 3' -57.2 NC_004084.1 + 2886 0.69 0.446566
Target:  5'- cCAGCGCGAuCGcggaggaucccaucAUCaaCGCGGUGCCGa -3'
miRNA:   3'- aGUCGUGCU-GC--------------UAGcgGCGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 14860 0.73 0.256215
Target:  5'- gUCGGgAUGACGGcCGCCGgucuCGGUGCCGu -3'
miRNA:   3'- -AGUCgUGCUGCUaGCGGC----GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 28980 0.66 0.66149
Target:  5'- cCAGCGCG-CGAcCGacgucggccugaugaCCGCGAUGCa- -3'
miRNA:   3'- aGUCGUGCuGCUaGC---------------GGCGCUACGgc -5'
16340 3' -57.2 NC_004084.1 + 3882 0.79 0.109709
Target:  5'- aCAGCGCcgGACGAucUCGCCGUccaGGUGCCGg -3'
miRNA:   3'- aGUCGUG--CUGCU--AGCGGCG---CUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 7408 0.7 0.411977
Target:  5'- -gAGCAaGGCGAUCGacgacgaggGCGAUGCCGa -3'
miRNA:   3'- agUCGUgCUGCUAGCgg-------CGCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 46571 0.7 0.421162
Target:  5'- cUCGGCAuCGGC-AUCGCgGCGAUcGUCGu -3'
miRNA:   3'- -AGUCGU-GCUGcUAGCGgCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 41911 0.71 0.343157
Target:  5'- gCGGCGCG-CGAUCGCCuGCuGUGgCGa -3'
miRNA:   3'- aGUCGUGCuGCUAGCGG-CGcUACgGC- -5'
16340 3' -57.2 NC_004084.1 + 39556 0.66 0.667913
Target:  5'- cCAGCGCGAuCGAcUCGaCCGgGAccGUCGa -3'
miRNA:   3'- aGUCGUGCU-GCU-AGC-GGCgCUa-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 36416 0.68 0.52951
Target:  5'- aCGGUcuuuCGACGAUCGCCGCaGAccUGUaCGa -3'
miRNA:   3'- aGUCGu---GCUGCUAGCGGCG-CU--ACG-GC- -5'
16340 3' -57.2 NC_004084.1 + 54365 0.66 0.650765
Target:  5'- cCAGCugG-CGGUCGgcagaucacucugaCGCGAUcGCCGu -3'
miRNA:   3'- aGUCGugCuGCUAGCg-------------GCGCUA-CGGC- -5'
16340 3' -57.2 NC_004084.1 + 56992 0.66 0.645396
Target:  5'- gCGGCcgaggACGGCGA-CGCCgagaaugGCGAcGCCGg -3'
miRNA:   3'- aGUCG-----UGCUGCUaGCGG-------CGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 22582 0.66 0.635724
Target:  5'- aUCAGCuaccACGACG-UCGCCGaCGAga-CGg -3'
miRNA:   3'- -AGUCG----UGCUGCuAGCGGC-GCUacgGC- -5'
16340 3' -57.2 NC_004084.1 + 47019 0.66 0.635724
Target:  5'- -gAGgACGucGCGAUCGauGaCGAUGCCGg -3'
miRNA:   3'- agUCgUGC--UGCUAGCggC-GCUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 55918 0.66 0.624976
Target:  5'- -gGGCugGaucgggaauGCGAUCGUCGCGAacaCCGg -3'
miRNA:   3'- agUCGugC---------UGCUAGCGGCGCUac-GGC- -5'
16340 3' -57.2 NC_004084.1 + 31391 0.66 0.614233
Target:  5'- uUCAGCcCGGCGAagGCCG--GUGUCGu -3'
miRNA:   3'- -AGUCGuGCUGCUagCGGCgcUACGGC- -5'
16340 3' -57.2 NC_004084.1 + 39619 0.66 0.624976
Target:  5'- cCGGCgacguccucgACGAguCGAUCGUaCGCGAcGCCGa -3'
miRNA:   3'- aGUCG----------UGCU--GCUAGCG-GCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 41184 0.67 0.560911
Target:  5'- gUCAGCugGgACGAacacgaCGcCCGCGAcGCUGg -3'
miRNA:   3'- -AGUCGugC-UGCUa-----GC-GGCGCUaCGGC- -5'
16340 3' -57.2 NC_004084.1 + 51239 0.68 0.55038
Target:  5'- gCAGCuCGACguccgGAUCGCUGCGA--CCGa -3'
miRNA:   3'- aGUCGuGCUG-----CUAGCGGCGCUacGGC- -5'
16340 3' -57.2 NC_004084.1 + 31198 0.68 0.539911
Target:  5'- aCAGCGCGuCGAcgUCGUCGCGAa-CCu -3'
miRNA:   3'- aGUCGUGCuGCU--AGCGGCGCUacGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.