miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16340 5' -55.9 NC_004084.1 + 18788 0.66 0.695605
Target:  5'- gCCGGuuggagggaacauCCAGGGCGUguGGUcGGCGaCGc -3'
miRNA:   3'- aGGCU-------------GGUCCCGUAguCCA-UCGUaGC- -5'
16340 5' -55.9 NC_004084.1 + 22114 0.66 0.695605
Target:  5'- aUCGAUCAGGGCGUCccGGUacucggaAGCAg-- -3'
miRNA:   3'- aGGCUGGUCCCGUAGu-CCA-------UCGUagc -5'
16340 5' -55.9 NC_004084.1 + 7151 0.66 0.675051
Target:  5'- gUUCGGCCGGGGUgguUCGGGgucGGUcgCa -3'
miRNA:   3'- -AGGCUGGUCCCGu--AGUCCa--UCGuaGc -5'
16340 5' -55.9 NC_004084.1 + 50290 0.66 0.675051
Target:  5'- gCCGACCAGGcgucgguCAUCAGGUucAGgAUgCGg -3'
miRNA:   3'- aGGCUGGUCCc------GUAGUCCA--UCgUA-GC- -5'
16340 5' -55.9 NC_004084.1 + 35465 0.67 0.631393
Target:  5'- aUCGACCAGGaGCAggUCgAGGcGGCgAUCGc -3'
miRNA:   3'- aGGCUGGUCC-CGU--AG-UCCaUCG-UAGC- -5'
16340 5' -55.9 NC_004084.1 + 11323 0.67 0.631393
Target:  5'- gCCGACCGgcGGGuUGUCGGGauUAGaCAUCGc -3'
miRNA:   3'- aGGCUGGU--CCC-GUAGUCC--AUC-GUAGC- -5'
16340 5' -55.9 NC_004084.1 + 9237 0.68 0.566097
Target:  5'- cUCGAUCAGGGCGUcCAGcGUcucGGgGUCGu -3'
miRNA:   3'- aGGCUGGUCCCGUA-GUC-CA---UCgUAGC- -5'
16340 5' -55.9 NC_004084.1 + 16436 0.68 0.566097
Target:  5'- gUCGAUguGGGCAUCGGuuacgGGCAUgGg -3'
miRNA:   3'- aGGCUGguCCCGUAGUCca---UCGUAgC- -5'
16340 5' -55.9 NC_004084.1 + 5039 0.69 0.513043
Target:  5'- cCCGACgAGGGCcggAUCuuGUAGCgGUCGg -3'
miRNA:   3'- aGGCUGgUCCCG---UAGucCAUCG-UAGC- -5'
16340 5' -55.9 NC_004084.1 + 12612 0.7 0.462142
Target:  5'- aUCGGCCAGaGcGCgAUCGGGUAGUcUCGu -3'
miRNA:   3'- aGGCUGGUC-C-CG-UAGUCCAUCGuAGC- -5'
16340 5' -55.9 NC_004084.1 + 11871 1.1 0.000817
Target:  5'- gUCCGACCAGGGCAUCAGGUAGCAUCGa -3'
miRNA:   3'- -AGGCUGGUCCCGUAGUCCAUCGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.