miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16341 3' -56.5 NC_004084.1 + 42308 0.66 0.731325
Target:  5'- aUCGGCGACGaucGCgaCGAccGUCG-GGACg -3'
miRNA:   3'- -GGCCGCUGCa--CGa-GCU--UAGCgCCUGa -5'
16341 3' -56.5 NC_004084.1 + 41992 0.66 0.731325
Target:  5'- uCCGGCaGCGUucGCU-GAcgCGaCGGACUc -3'
miRNA:   3'- -GGCCGcUGCA--CGAgCUuaGC-GCCUGA- -5'
16341 3' -56.5 NC_004084.1 + 30242 0.66 0.730298
Target:  5'- gCGGCGACGUcgaacagGC-CGAGga-CGGACUa -3'
miRNA:   3'- gGCCGCUGCA-------CGaGCUUagcGCCUGA- -5'
16341 3' -56.5 NC_004084.1 + 29343 0.66 0.730298
Target:  5'- gCGGCGACGacGCcccCGAgcgggcgGUCGCGGcCUg -3'
miRNA:   3'- gGCCGCUGCa-CGa--GCU-------UAGCGCCuGA- -5'
16341 3' -56.5 NC_004084.1 + 13555 0.66 0.721006
Target:  5'- cUCaGCGACGUcCUCcuggaAGUCGCGGGCc -3'
miRNA:   3'- -GGcCGCUGCAcGAGc----UUAGCGCCUGa -5'
16341 3' -56.5 NC_004084.1 + 16724 0.66 0.710603
Target:  5'- aCCGG-GACGcGCUCGccggucugcAUCGCGGcCUc -3'
miRNA:   3'- -GGCCgCUGCaCGAGCu--------UAGCGCCuGA- -5'
16341 3' -56.5 NC_004084.1 + 22483 0.66 0.710603
Target:  5'- cCCGGCGACGccggggacaUGCUCGugaacCGCGucauccucGACg -3'
miRNA:   3'- -GGCCGCUGC---------ACGAGCuua--GCGC--------CUGa -5'
16341 3' -56.5 NC_004084.1 + 11095 0.66 0.705374
Target:  5'- gUCGGCGACGagaucgccguucgcgGCUCGAAggaugucccagagcCGCuGGACg -3'
miRNA:   3'- -GGCCGCUGCa--------------CGAGCUUa-------------GCG-CCUGa -5'
16341 3' -56.5 NC_004084.1 + 22438 0.66 0.700127
Target:  5'- gUCGGaGACGaGCugaUCGAGUCG-GGACUg -3'
miRNA:   3'- -GGCCgCUGCaCG---AGCUUAGCgCCUGA- -5'
16341 3' -56.5 NC_004084.1 + 40248 0.66 0.700127
Target:  5'- gCGaGUGACGUGCUCGAucuccAUCGUccACUc -3'
miRNA:   3'- gGC-CGCUGCACGAGCU-----UAGCGccUGA- -5'
16341 3' -56.5 NC_004084.1 + 53090 0.66 0.700127
Target:  5'- cUCGGCGACGUGaucuUCGAGUCGg----- -3'
miRNA:   3'- -GGCCGCUGCACg---AGCUUAGCgccuga -5'
16341 3' -56.5 NC_004084.1 + 56615 0.66 0.689589
Target:  5'- gCCGGuCGGCGaGUUCGccgGAUCGUGG-CUc -3'
miRNA:   3'- -GGCC-GCUGCaCGAGC---UUAGCGCCuGA- -5'
16341 3' -56.5 NC_004084.1 + 43802 0.66 0.678998
Target:  5'- uCCGGCGGCGaggagcGC-CGGGagauggaucauUCGUGGGCg -3'
miRNA:   3'- -GGCCGCUGCa-----CGaGCUU-----------AGCGCCUGa -5'
16341 3' -56.5 NC_004084.1 + 10530 0.66 0.678998
Target:  5'- aCCGuCGACGuUGC-CGAGccaGCGGACg -3'
miRNA:   3'- -GGCcGCUGC-ACGaGCUUag-CGCCUGa -5'
16341 3' -56.5 NC_004084.1 + 11393 0.67 0.672623
Target:  5'- cCCGGCaucgucaucgaucgcGACGUcCUCGAGgaacUCGCGGuCg -3'
miRNA:   3'- -GGCCG---------------CUGCAcGAGCUU----AGCGCCuGa -5'
16341 3' -56.5 NC_004084.1 + 24020 0.67 0.668366
Target:  5'- aCGGCGAUGgacgCG-GUUGCGGGCUc -3'
miRNA:   3'- gGCCGCUGCacgaGCuUAGCGCCUGA- -5'
16341 3' -56.5 NC_004084.1 + 35837 0.67 0.667301
Target:  5'- gUCGGCGACGUcgugguaGCUgauaucgaccCGGAUC-CGGACc -3'
miRNA:   3'- -GGCCGCUGCA-------CGA----------GCUUAGcGCCUGa -5'
16341 3' -56.5 NC_004084.1 + 36248 0.67 0.656633
Target:  5'- aCCGGguCGACGUcCUCGAGugcgccgaggcgcUCGCGGuCa -3'
miRNA:   3'- -GGCC--GCUGCAcGAGCUU-------------AGCGCCuGa -5'
16341 3' -56.5 NC_004084.1 + 384 0.67 0.647014
Target:  5'- cCCGGgGACGUcGCcgcCGAuGUCGCaGACg -3'
miRNA:   3'- -GGCCgCUGCA-CGa--GCU-UAGCGcCUGa -5'
16341 3' -56.5 NC_004084.1 + 11035 0.67 0.636314
Target:  5'- uCCGGCGAuCGUGUUCGAc-UGgGaGACg -3'
miRNA:   3'- -GGCCGCU-GCACGAGCUuaGCgC-CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.