miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16341 5' -56 NC_004084.1 + 35974 0.66 0.715938
Target:  5'- -cAGUCCcgaCUCGAucagcucgucUCCgaccgcgUCGUCGGaGCCg -3'
miRNA:   3'- caUCAGGa--GAGCU----------AGG-------AGCAGCC-CGG- -5'
16341 5' -56 NC_004084.1 + 28602 0.66 0.695847
Target:  5'- aGUGGUCgUCuUCGGUgaUCUCGUaGcGGCCg -3'
miRNA:   3'- -CAUCAGgAG-AGCUA--GGAGCAgC-CCGG- -5'
16341 5' -56 NC_004084.1 + 16659 0.66 0.695847
Target:  5'- --cGUCCgggaGGUCCUCGUCGccGGCg -3'
miRNA:   3'- cauCAGGagagCUAGGAGCAGC--CCGg -5'
16341 5' -56 NC_004084.1 + 51757 0.66 0.685182
Target:  5'- cGUGG-CgUCgUCGGgcUCUUCGUCGGGUg -3'
miRNA:   3'- -CAUCaGgAG-AGCU--AGGAGCAGCCCGg -5'
16341 5' -56 NC_004084.1 + 48407 0.66 0.685182
Target:  5'- cGUGGccgCCaUCUCGGagaUCUUCGUCGacgucgucGGCCa -3'
miRNA:   3'- -CAUCa--GG-AGAGCU---AGGAGCAGC--------CCGG- -5'
16341 5' -56 NC_004084.1 + 55486 0.66 0.685182
Target:  5'- -gAGUCCUC-CGGgaucUCCUCucccagcuUCGGGUCg -3'
miRNA:   3'- caUCAGGAGaGCU----AGGAGc-------AGCCCGG- -5'
16341 5' -56 NC_004084.1 + 35184 0.67 0.674468
Target:  5'- -cGGUCCgggccgCUCGAgcuccUCCgaaUCGUCGGGaUCg -3'
miRNA:   3'- caUCAGGa-----GAGCU-----AGG---AGCAGCCC-GG- -5'
16341 5' -56 NC_004084.1 + 49427 0.67 0.661562
Target:  5'- -gAGUCCUCgUCGAacucguagcugcCCUCGUCGccGCCg -3'
miRNA:   3'- caUCAGGAG-AGCUa-----------GGAGCAGCc-CGG- -5'
16341 5' -56 NC_004084.1 + 15395 0.67 0.652935
Target:  5'- -gGGUCCgCUUGcgUCUCGUUGGGg- -3'
miRNA:   3'- caUCAGGaGAGCuaGGAGCAGCCCgg -5'
16341 5' -56 NC_004084.1 + 36681 0.68 0.609723
Target:  5'- --cGUCCagggUUCGuggGUCCUCGUCGGGa- -3'
miRNA:   3'- cauCAGGa---GAGC---UAGGAGCAGCCCgg -5'
16341 5' -56 NC_004084.1 + 35123 0.68 0.609723
Target:  5'- -cAGUUCUUgUCGAUCCUgggCGUCGaGGUCc -3'
miRNA:   3'- caUCAGGAG-AGCUAGGA---GCAGC-CCGG- -5'
16341 5' -56 NC_004084.1 + 36078 0.69 0.514349
Target:  5'- gGUAGUUCUCgcccUCGAguUCCUCGUCGucuucguccGGCg -3'
miRNA:   3'- -CAUCAGGAG----AGCU--AGGAGCAGC---------CCGg -5'
16341 5' -56 NC_004084.1 + 52380 0.7 0.483832
Target:  5'- uUGGUCCUcCUCGAggaCCUCGUUGaacucgaguucGGCUg -3'
miRNA:   3'- cAUCAGGA-GAGCUa--GGAGCAGC-----------CCGG- -5'
16341 5' -56 NC_004084.1 + 38842 0.7 0.472861
Target:  5'- --cGUCCUCguggucugggacgUCG-UCCUCGUCGaGCCa -3'
miRNA:   3'- cauCAGGAG-------------AGCuAGGAGCAGCcCGG- -5'
16341 5' -56 NC_004084.1 + 48972 0.7 0.454212
Target:  5'- aGUAGUCgUCUUcGUCgaCGUCGcGGCCc -3'
miRNA:   3'- -CAUCAGgAGAGcUAGgaGCAGC-CCGG- -5'
16341 5' -56 NC_004084.1 + 35681 0.7 0.454212
Target:  5'- --uGUCCUCguaccgcugggCGGaCUUCGUCGGGUCg -3'
miRNA:   3'- cauCAGGAGa----------GCUaGGAGCAGCCCGG- -5'
16341 5' -56 NC_004084.1 + 58121 0.71 0.407137
Target:  5'- -gGGUUCUCgucggCGGUCgUCGUCGaGCCg -3'
miRNA:   3'- caUCAGGAGa----GCUAGgAGCAGCcCGG- -5'
16341 5' -56 NC_004084.1 + 30912 0.72 0.36324
Target:  5'- cGUGGUCCUCcuggaagacgUCGAUCgCUCGUCGacGUCg -3'
miRNA:   3'- -CAUCAGGAG----------AGCUAG-GAGCAGCc-CGG- -5'
16341 5' -56 NC_004084.1 + 39724 0.73 0.346624
Target:  5'- -cAGcUCUUCUgGccccaGUCCUCGUCGGGUCu -3'
miRNA:   3'- caUC-AGGAGAgC-----UAGGAGCAGCCCGG- -5'
16341 5' -56 NC_004084.1 + 50242 0.73 0.330559
Target:  5'- -gAGUCCUCUgcGUCCUCGUCGccguuGGCg -3'
miRNA:   3'- caUCAGGAGAgcUAGGAGCAGC-----CCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.