miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16343 5' -58.4 NC_004084.1 + 6596 0.66 0.521757
Target:  5'- aGUGGCGaCAGUCGGCGgGcGCGgaGg -3'
miRNA:   3'- -CACCGCcGUCGGCUGCgUuUGCgaCa -5'
16343 5' -58.4 NC_004084.1 + 11066 0.66 0.511382
Target:  5'- -gGGCGGCcGCCGACGaaCAugUGCUu- -3'
miRNA:   3'- caCCGCCGuCGGCUGC--GUuuGCGAca -5'
16343 5' -58.4 NC_004084.1 + 51392 0.66 0.509316
Target:  5'- -cGGCaacgagauGGCGGCCGACGCcgucgaggccuucGAgggcgacACGCUGa -3'
miRNA:   3'- caCCG--------CCGUCGGCUGCG-------------UU-------UGCGACa -5'
16343 5' -58.4 NC_004084.1 + 29428 0.66 0.501093
Target:  5'- --cGCGGUcaucaGGCCGACGuCGGucgcGCGCUGg -3'
miRNA:   3'- cacCGCCG-----UCGGCUGC-GUU----UGCGACa -5'
16343 5' -58.4 NC_004084.1 + 14106 0.67 0.480797
Target:  5'- cGUGGCGGCAGuguCCGACcuGCGucucAGCGUcGUu -3'
miRNA:   3'- -CACCGCCGUC---GGCUG--CGU----UUGCGaCA- -5'
16343 5' -58.4 NC_004084.1 + 50266 0.67 0.474787
Target:  5'- uUGGCGGCGagguccucgacgucuGCCGAC-CAGGCGUcgGUc -3'
miRNA:   3'- cACCGCCGU---------------CGGCUGcGUUUGCGa-CA- -5'
16343 5' -58.4 NC_004084.1 + 22479 0.67 0.451131
Target:  5'- cGUGGUGGCGGCUccaguucggGACGUAguccacgucGACGCg-- -3'
miRNA:   3'- -CACCGCCGUCGG---------CUGCGU---------UUGCGaca -5'
16343 5' -58.4 NC_004084.1 + 46900 0.68 0.431921
Target:  5'- -cGGCGGCGcaggagguGuuGAUGCAGAUGcCUGa -3'
miRNA:   3'- caCCGCCGU--------CggCUGCGUUUGC-GACa -5'
16343 5' -58.4 NC_004084.1 + 36115 0.69 0.368652
Target:  5'- -cGGCGGCGuaucgucaucGCCGaACGCGAgguGCGUUGc -3'
miRNA:   3'- caCCGCCGU----------CGGC-UGCGUU---UGCGACa -5'
16343 5' -58.4 NC_004084.1 + 269 0.69 0.368652
Target:  5'- -cGaGCGuGCAGCUGGgGCAGACGgUGa -3'
miRNA:   3'- caC-CGC-CGUCGGCUgCGUUUGCgACa -5'
16343 5' -58.4 NC_004084.1 + 26161 0.69 0.35178
Target:  5'- -gGGCgGGCAGUCGACGaGAACGUaGUc -3'
miRNA:   3'- caCCG-CCGUCGGCUGCgUUUGCGaCA- -5'
16343 5' -58.4 NC_004084.1 + 15684 0.7 0.319706
Target:  5'- cGUGGCGcucGCAGCCGAucaacuCGCcGACGCg-- -3'
miRNA:   3'- -CACCGC---CGUCGGCU------GCGuUUGCGaca -5'
16343 5' -58.4 NC_004084.1 + 16645 0.7 0.312037
Target:  5'- -cGG-GGCGGgUGACGCAGcCGCUGg -3'
miRNA:   3'- caCCgCCGUCgGCUGCGUUuGCGACa -5'
16343 5' -58.4 NC_004084.1 + 37374 0.71 0.289158
Target:  5'- -cGGUGGCcGCCuGACuucgacgaacucgGCAGACGCUGg -3'
miRNA:   3'- caCCGCCGuCGG-CUG-------------CGUUUGCGACa -5'
16343 5' -58.4 NC_004084.1 + 51254 0.72 0.243001
Target:  5'- -aGGCGGCuucGUCaGCgGCGAACGCUGUg -3'
miRNA:   3'- caCCGCCGu--CGGcUG-CGUUUGCGACA- -5'
16343 5' -58.4 NC_004084.1 + 11546 1.07 0.000694
Target:  5'- cGUGGCGGCAGCCGACGCAAACGCUGUc -3'
miRNA:   3'- -CACCGCCGUCGGCUGCGUUUGCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.