miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16344 5' -54.4 NC_004084.1 + 29344 0.66 0.810371
Target:  5'- cGgCGAcgACGCCccCGAGCGGgCGGUCgCg -3'
miRNA:   3'- -CgGCU--UGUGGa-GCUUGUCgGUCAGgG- -5'
16344 5' -54.4 NC_004084.1 + 39565 0.66 0.810371
Target:  5'- aCUGcgUA-CUCGAGCAGCUcgucgacgaGGUCCCg -3'
miRNA:   3'- cGGCuuGUgGAGCUUGUCGG---------UCAGGG- -5'
16344 5' -54.4 NC_004084.1 + 18806 0.66 0.800911
Target:  5'- cGUCGAGgACgUCGc-CGGCCAcGUCCa -3'
miRNA:   3'- -CGGCUUgUGgAGCuuGUCGGU-CAGGg -5'
16344 5' -54.4 NC_004084.1 + 56946 0.66 0.800911
Target:  5'- cGUCGucgGCGCU--GAACuGCUGGUCCCa -3'
miRNA:   3'- -CGGCu--UGUGGagCUUGuCGGUCAGGG- -5'
16344 5' -54.4 NC_004084.1 + 41804 0.66 0.800911
Target:  5'- -aCGAucgACCUCGAGgAGCCcgccgGGUCCg -3'
miRNA:   3'- cgGCUug-UGGAGCUUgUCGG-----UCAGGg -5'
16344 5' -54.4 NC_004084.1 + 16393 0.66 0.800911
Target:  5'- uGUCGAcCGCCUCGcucgcGACGGCCA--CUCg -3'
miRNA:   3'- -CGGCUuGUGGAGC-----UUGUCGGUcaGGG- -5'
16344 5' -54.4 NC_004084.1 + 11456 0.66 0.799955
Target:  5'- aCCGcuCACCUCGAguucgaaGCAGCCg--CUCg -3'
miRNA:   3'- cGGCuuGUGGAGCU-------UGUCGGucaGGG- -5'
16344 5' -54.4 NC_004084.1 + 24184 0.66 0.791277
Target:  5'- cCCGcACACCUaCGAcgACAGCC-GUUCa -3'
miRNA:   3'- cGGCuUGUGGA-GCU--UGUCGGuCAGGg -5'
16344 5' -54.4 NC_004084.1 + 31270 0.66 0.791277
Target:  5'- gGUCGAGC---UCGAACguGGCCGGUCgCg -3'
miRNA:   3'- -CGGCUUGuggAGCUUG--UCGGUCAGgG- -5'
16344 5' -54.4 NC_004084.1 + 9925 0.66 0.791277
Target:  5'- --aGAGCGCCUCGAcgagccuCAGCgAGUUgCu -3'
miRNA:   3'- cggCUUGUGGAGCUu------GUCGgUCAGgG- -5'
16344 5' -54.4 NC_004084.1 + 18162 0.66 0.791277
Target:  5'- aGCgCGAGCGugaacuccauccCCUCGAucuggAUGGCCAGcUUCCg -3'
miRNA:   3'- -CG-GCUUGU------------GGAGCU-----UGUCGGUC-AGGG- -5'
16344 5' -54.4 NC_004084.1 + 44940 0.66 0.791277
Target:  5'- uCCG-ACACCUCGuugguUAGCCcgaucuGGUCCg -3'
miRNA:   3'- cGGCuUGUGGAGCuu---GUCGG------UCAGGg -5'
16344 5' -54.4 NC_004084.1 + 19930 0.66 0.791277
Target:  5'- gGCCGA---UCUCGAcCAGCUcGUCCa -3'
miRNA:   3'- -CGGCUuguGGAGCUuGUCGGuCAGGg -5'
16344 5' -54.4 NC_004084.1 + 56839 0.66 0.785417
Target:  5'- aGCgCGG--GCCUCGAGCcucgGGCCAGagcacuuguagugucUCCCc -3'
miRNA:   3'- -CG-GCUugUGGAGCUUG----UCGGUC---------------AGGG- -5'
16344 5' -54.4 NC_004084.1 + 15551 0.66 0.781479
Target:  5'- uGCCGGAgUGCCagaucgcguUCGAACgcgAGCCGGUUCa -3'
miRNA:   3'- -CGGCUU-GUGG---------AGCUUG---UCGGUCAGGg -5'
16344 5' -54.4 NC_004084.1 + 335 0.66 0.781479
Target:  5'- cGCCGAACuCgUCGuugAGCCAGguggCCUc -3'
miRNA:   3'- -CGGCUUGuGgAGCuugUCGGUCa---GGG- -5'
16344 5' -54.4 NC_004084.1 + 8936 0.66 0.781479
Target:  5'- aCCGGuACACCUCaGcGCGGUugUAGUCCUc -3'
miRNA:   3'- cGGCU-UGUGGAG-CuUGUCG--GUCAGGG- -5'
16344 5' -54.4 NC_004084.1 + 25398 0.66 0.781479
Target:  5'- gGUCGAGCugCUCcuGAACGG-UGGUCUCc -3'
miRNA:   3'- -CGGCUUGugGAG--CUUGUCgGUCAGGG- -5'
16344 5' -54.4 NC_004084.1 + 39464 0.66 0.781479
Target:  5'- gGCgCGAGCGCCgaUCGAGgaGGCCAacaaggCCCu -3'
miRNA:   3'- -CG-GCUUGUGG--AGCUUg-UCGGUca----GGG- -5'
16344 5' -54.4 NC_004084.1 + 21907 0.66 0.771528
Target:  5'- gGCCGcGgACUcguuUCGAuCGGCCccaguAGUCCCg -3'
miRNA:   3'- -CGGCuUgUGG----AGCUuGUCGG-----UCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.