miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16345 3' -52.7 NC_004084.1 + 40194 0.66 0.886158
Target:  5'- uUCGUacUCGUACGCuCGgaaCGCCuucGCCa -3'
miRNA:   3'- -AGCA--AGCAUGUG-GCga-GCGGuaaCGG- -5'
16345 3' -52.7 NC_004084.1 + 47525 0.66 0.886158
Target:  5'- aUCGggaGUAC-CCGacgaUCGCCAUcauccgGCCa -3'
miRNA:   3'- -AGCaagCAUGuGGCg---AGCGGUAa-----CGG- -5'
16345 3' -52.7 NC_004084.1 + 9073 0.66 0.878576
Target:  5'- aCGUUCGgagauCGCCGCgguaCGCCGaccggGCg -3'
miRNA:   3'- aGCAAGCau---GUGGCGa---GCGGUaa---CGg -5'
16345 3' -52.7 NC_004084.1 + 14176 0.66 0.878576
Target:  5'- gUCGUcccgUCGUAgACgaGCUCccaGCCGUcgGCCa -3'
miRNA:   3'- -AGCA----AGCAUgUGg-CGAG---CGGUAa-CGG- -5'
16345 3' -52.7 NC_004084.1 + 9267 0.66 0.862645
Target:  5'- gUCGUUCGUgaacGCAUCGaacgUCGCCug-GUCc -3'
miRNA:   3'- -AGCAAGCA----UGUGGCg---AGCGGuaaCGG- -5'
16345 3' -52.7 NC_004084.1 + 18709 0.66 0.857673
Target:  5'- aCGgcgUCGU-CGCCGUcacuggcggguucggUCgaGCCGUUGCCc -3'
miRNA:   3'- aGCa--AGCAuGUGGCG---------------AG--CGGUAACGG- -5'
16345 3' -52.7 NC_004084.1 + 34849 0.66 0.845741
Target:  5'- gUCG-UCGUACGagaCGCaUCGCUugcGCCg -3'
miRNA:   3'- -AGCaAGCAUGUg--GCG-AGCGGuaaCGG- -5'
16345 3' -52.7 NC_004084.1 + 16778 0.66 0.845741
Target:  5'- gCGcUCcucGCACCGUUCGCCGcgGCg -3'
miRNA:   3'- aGCaAGca-UGUGGCGAGCGGUaaCGg -5'
16345 3' -52.7 NC_004084.1 + 29398 0.66 0.845741
Target:  5'- gUCGggCGgcCACUccugggGCgUCGCgGUUGCCg -3'
miRNA:   3'- -AGCaaGCauGUGG------CG-AGCGgUAACGG- -5'
16345 3' -52.7 NC_004084.1 + 14137 0.67 0.836944
Target:  5'- gUCGUUC--AUACCGacacCUCGCCGUcGUCg -3'
miRNA:   3'- -AGCAAGcaUGUGGC----GAGCGGUAaCGG- -5'
16345 3' -52.7 NC_004084.1 + 58072 0.67 0.827928
Target:  5'- gUGUUCG-ACGgCGUU-GUCGUUGCCg -3'
miRNA:   3'- aGCAAGCaUGUgGCGAgCGGUAACGG- -5'
16345 3' -52.7 NC_004084.1 + 52751 0.67 0.825182
Target:  5'- cCGUcUCGUcgACGguggcuuucuggauCCGCUCGCCA--GCCu -3'
miRNA:   3'- aGCA-AGCA--UGU--------------GGCGAGCGGUaaCGG- -5'
16345 3' -52.7 NC_004084.1 + 52078 0.67 0.818703
Target:  5'- uUCGUcgCGUACAUCGCcgaCGUUAccGCCg -3'
miRNA:   3'- -AGCAa-GCAUGUGGCGa--GCGGUaaCGG- -5'
16345 3' -52.7 NC_004084.1 + 36433 0.67 0.80928
Target:  5'- gUCGUcgaCGUACGCCGUcUGCaCcgUGUCg -3'
miRNA:   3'- -AGCAa--GCAUGUGGCGaGCG-GuaACGG- -5'
16345 3' -52.7 NC_004084.1 + 47246 0.68 0.78988
Target:  5'- aCGaaCGaUACgACCgGCUCGCCGgcGCCu -3'
miRNA:   3'- aGCaaGC-AUG-UGG-CGAGCGGUaaCGG- -5'
16345 3' -52.7 NC_004084.1 + 55580 0.68 0.749171
Target:  5'- cUGUUCG-GCAUC-CUCGCCAacgUGCUg -3'
miRNA:   3'- aGCAAGCaUGUGGcGAGCGGUa--ACGG- -5'
16345 3' -52.7 NC_004084.1 + 54836 0.69 0.723773
Target:  5'- aCGUUCGUcgcggucGC-CCGCUCGCUuUccaucggaccgaccUGCCa -3'
miRNA:   3'- aGCAAGCA-------UGuGGCGAGCGGuA--------------ACGG- -5'
16345 3' -52.7 NC_004084.1 + 5364 0.69 0.717334
Target:  5'- aCGUcUCGUuuACugCGgaCGCCG-UGCCa -3'
miRNA:   3'- aGCA-AGCA--UGugGCgaGCGGUaACGG- -5'
16345 3' -52.7 NC_004084.1 + 14048 0.69 0.706535
Target:  5'- gUGUUCaggagGUG--UCGCUCGCCGUUGUCa -3'
miRNA:   3'- aGCAAG-----CAUguGGCGAGCGGUAACGG- -5'
16345 3' -52.7 NC_004084.1 + 6383 0.69 0.695662
Target:  5'- aCGc-CGUAgACCGCUCGCUca-GCCu -3'
miRNA:   3'- aGCaaGCAUgUGGCGAGCGGuaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.