miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 3' -51.7 NC_004084.1 + 23185 0.72 0.657959
Target:  5'- ---aGAGguggUCGACGUCGAucGCgaUCGUCGg -3'
miRNA:   3'- ccuaCUCa---AGCUGCAGCU--CG--AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 21250 0.72 0.646967
Target:  5'- cGAUGAugUCGaACGcccCGAGCUCGUCGc -3'
miRNA:   3'- cCUACUcaAGC-UGCa--GCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 33253 0.73 0.559348
Target:  5'- cGAUGAG---GACGUCGAGgaCGUCGu -3'
miRNA:   3'- cCUACUCaagCUGCAGCUCgaGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 32374 0.73 0.559348
Target:  5'- cGGUGAGa-CGACGaUCGAGCUCGggcUCGa -3'
miRNA:   3'- cCUACUCaaGCUGC-AGCUCGAGC---AGC- -5'
16346 3' -51.7 NC_004084.1 + 30923 0.74 0.516661
Target:  5'- uGGAaGAcGUcgaucgcucgUCGACGUCGAGCUCGagGa -3'
miRNA:   3'- -CCUaCU-CA----------AGCUGCAGCUCGAGCagC- -5'
16346 3' -51.7 NC_004084.1 + 53043 0.75 0.485523
Target:  5'- uGGAcGcccaGGUUCGACGUCGAGaUCGUCc -3'
miRNA:   3'- -CCUaC----UCAAGCUGCAGCUCgAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 42391 0.75 0.455307
Target:  5'- cGGAcagauUGAGUUCGuCuUUGAGCUCGUUGa -3'
miRNA:   3'- -CCU-----ACUCAAGCuGcAGCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 10378 1.12 0.002185
Target:  5'- cGGAUGAGUUCGACGUCGAGCUCGUCGu -3'
miRNA:   3'- -CCUACUCAAGCUGCAGCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 49608 0.69 0.823033
Target:  5'- ---cGAGUUCGcCGUCGAcggagauCUCGUCGc -3'
miRNA:   3'- ccuaCUCAAGCuGCAGCUc------GAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 26471 0.69 0.823033
Target:  5'- uGGuUGAGcgcgccggCGACGUUGAGUguggUCGUCGu -3'
miRNA:   3'- -CCuACUCaa------GCUGCAGCUCG----AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 18767 0.66 0.928144
Target:  5'- uGGAgcgcgcGAGUuccUCGGCGUCGcGUacgaucgacUCGUCGa -3'
miRNA:   3'- -CCUa-----CUCA---AGCUGCAGCuCG---------AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 1657 0.66 0.922343
Target:  5'- gGGGUGcucGUUcccCGACGUCGAguGCUUGUgGa -3'
miRNA:   3'- -CCUACu--CAA---GCUGCAGCU--CGAGCAgC- -5'
16346 3' -51.7 NC_004084.1 + 3 0.66 0.922343
Target:  5'- uGGUGAGUcgggggucuUCGAaGUCGAGgUCGUg- -3'
miRNA:   3'- cCUACUCA---------AGCUgCAGCUCgAGCAgc -5'
16346 3' -51.7 NC_004084.1 + 1971 0.67 0.903287
Target:  5'- ---aGAGcgCGcCGUCGAGaUCGUCGu -3'
miRNA:   3'- ccuaCUCaaGCuGCAGCUCgAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 25995 0.67 0.889228
Target:  5'- -----cGUucgCGACGagugCGAGCUCGUCGa -3'
miRNA:   3'- ccuacuCAa--GCUGCa---GCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 26306 0.67 0.874123
Target:  5'- uGGUGc--UCGACGacgagcugcUCGAGCUCGUCc -3'
miRNA:   3'- cCUACucaAGCUGC---------AGCUCGAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 50143 0.68 0.858015
Target:  5'- cGGAUGAcgaggUCGuuGUCGAGgaUGUCGu -3'
miRNA:   3'- -CCUACUca---AGCugCAGCUCgaGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 17840 0.68 0.840963
Target:  5'- ---cGAGUUCGAUGgUGAcCUCGUCGc -3'
miRNA:   3'- ccuaCUCAAGCUGCaGCUcGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 22086 0.68 0.832103
Target:  5'- uGGUGAGUUCGACGaagucgucaCGGGCaUCGaUCa -3'
miRNA:   3'- cCUACUCAAGCUGCa--------GCUCG-AGC-AGc -5'
16346 3' -51.7 NC_004084.1 + 21597 0.68 0.832103
Target:  5'- -----cGUUCGAucggcguuCGUCGAcGCUCGUCGa -3'
miRNA:   3'- ccuacuCAAGCU--------GCAGCU-CGAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.