miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 3' -51.7 NC_004084.1 + 26471 0.69 0.823033
Target:  5'- uGGuUGAGcgcgccggCGACGUUGAGUguggUCGUCGu -3'
miRNA:   3'- -CCuACUCaa------GCUGCAGCUCG----AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 49608 0.69 0.823033
Target:  5'- ---cGAGUUCGcCGUCGAcggagauCUCGUCGc -3'
miRNA:   3'- ccuaCUCAAGCuGCAGCUc------GAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 29744 0.69 0.8043
Target:  5'- ----cAGUgcUCGACGUUGAGCUCGcugCGg -3'
miRNA:   3'- ccuacUCA--AGCUGCAGCUCGAGCa--GC- -5'
16346 3' -51.7 NC_004084.1 + 44225 0.69 0.794658
Target:  5'- cGGAUGGc--CGACGgcuggGAGCUCGUCu -3'
miRNA:   3'- -CCUACUcaaGCUGCag---CUCGAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 22831 0.69 0.794658
Target:  5'- cGGGUGAGgcguucgUCGACGgccUCGugauGCUCGaCGa -3'
miRNA:   3'- -CCUACUCa------AGCUGC---AGCu---CGAGCaGC- -5'
16346 3' -51.7 NC_004084.1 + 56928 0.69 0.784846
Target:  5'- ---cGAGggCGACGUCuaccagGAGgUCGUCGa -3'
miRNA:   3'- ccuaCUCaaGCUGCAG------CUCgAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 31341 0.7 0.733628
Target:  5'- cGGAgcAGUucgucgUCGACGUCGAGCaUCGcgCGa -3'
miRNA:   3'- -CCUacUCA------AGCUGCAGCUCG-AGCa-GC- -5'
16346 3' -51.7 NC_004084.1 + 16928 0.7 0.733628
Target:  5'- cGGGUGcGGUUCGGCaUCG-GCgggCGUCGc -3'
miRNA:   3'- -CCUAC-UCAAGCUGcAGCuCGa--GCAGC- -5'
16346 3' -51.7 NC_004084.1 + 50595 0.71 0.701583
Target:  5'- cGGAucUGGGagCGugccuccaGCGUCGAGgUCGUCGa -3'
miRNA:   3'- -CCU--ACUCaaGC--------UGCAGCUCgAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 23185 0.72 0.657959
Target:  5'- ---aGAGguggUCGACGUCGAucGCgaUCGUCGg -3'
miRNA:   3'- ccuaCUCa---AGCUGCAGCU--CG--AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 986 0.72 0.657959
Target:  5'- --cUGAGUUCGAgGuguuguccaccUCGAGCUCGcCGg -3'
miRNA:   3'- ccuACUCAAGCUgC-----------AGCUCGAGCaGC- -5'
16346 3' -51.7 NC_004084.1 + 27459 0.72 0.657959
Target:  5'- cGGAgcggGAGacggUCGGCGuccUCGAGCUCGacgUCGa -3'
miRNA:   3'- -CCUa---CUCa---AGCUGC---AGCUCGAGC---AGC- -5'
16346 3' -51.7 NC_004084.1 + 21250 0.72 0.646967
Target:  5'- cGAUGAugUCGaACGcccCGAGCUCGUCGc -3'
miRNA:   3'- cCUACUcaAGC-UGCa--GCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 32374 0.73 0.559348
Target:  5'- cGGUGAGa-CGACGaUCGAGCUCGggcUCGa -3'
miRNA:   3'- cCUACUCaaGCUGC-AGCUCGAGC---AGC- -5'
16346 3' -51.7 NC_004084.1 + 33253 0.73 0.559348
Target:  5'- cGAUGAG---GACGUCGAGgaCGUCGu -3'
miRNA:   3'- cCUACUCaagCUGCAGCUCgaGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 30923 0.74 0.516661
Target:  5'- uGGAaGAcGUcgaucgcucgUCGACGUCGAGCUCGagGa -3'
miRNA:   3'- -CCUaCU-CA----------AGCUGCAGCUCGAGCagC- -5'
16346 3' -51.7 NC_004084.1 + 53043 0.75 0.485523
Target:  5'- uGGAcGcccaGGUUCGACGUCGAGaUCGUCc -3'
miRNA:   3'- -CCUaC----UCAAGCUGCAGCUCgAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 42391 0.75 0.455307
Target:  5'- cGGAcagauUGAGUUCGuCuUUGAGCUCGUUGa -3'
miRNA:   3'- -CCU-----ACUCAAGCuGcAGCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 4574 0.77 0.362622
Target:  5'- gGGAUGAGUUCGGauUCGAGC-CGUUc -3'
miRNA:   3'- -CCUACUCAAGCUgcAGCUCGaGCAGc -5'
16346 3' -51.7 NC_004084.1 + 21925 0.8 0.256379
Target:  5'- ---cGAGUUCGACGUCGAGgaaaUUGUCGg -3'
miRNA:   3'- ccuaCUCAAGCUGCAGCUCg---AGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.