miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 30593 0.7 0.508391
Target:  5'- -gUGACC-UCgcggacgcCGCGGUCGAUGUCCa -3'
miRNA:   3'- caGCUGGuAGa-------GCGUCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 29768 0.66 0.73397
Target:  5'- -aUGACCGUCcugcaUCGCgacgGGUCGGCGUacaCCUa -3'
miRNA:   3'- caGCUGGUAG-----AGCG----UCAGCUGCA---GGA- -5'
16346 5' -55.1 NC_004084.1 + 29070 0.69 0.592478
Target:  5'- cGUCGACCAg--CGCgAGUUcgagagcgcguggGACGUCCUc -3'
miRNA:   3'- -CAGCUGGUagaGCG-UCAG-------------CUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 28757 0.67 0.669842
Target:  5'- aGUCgGGCCAuguaccagcugUCcgCGCGgucGUCGACGUCCg -3'
miRNA:   3'- -CAG-CUGGU-----------AGa-GCGU---CAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 28306 0.68 0.648072
Target:  5'- -cCGGCCcgCUCccCAG-CGACGUCCg -3'
miRNA:   3'- caGCUGGuaGAGc-GUCaGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 27791 0.7 0.487859
Target:  5'- cGUCGucGCgAaCUCGUAGUCGGCGUCg- -3'
miRNA:   3'- -CAGC--UGgUaGAGCGUCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 27452 0.66 0.764827
Target:  5'- aUCGAuCCGgagCgggaGaCGGUCGGCGUCCUc -3'
miRNA:   3'- cAGCU-GGUa--Gag--C-GUCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 26265 0.69 0.590307
Target:  5'- cGUUGAUCAUCgUcucgugcgacgggaCGCAGUCGACcUCCUg -3'
miRNA:   3'- -CAGCUGGUAG-A--------------GCGUCAGCUGcAGGA- -5'
16346 5' -55.1 NC_004084.1 + 21880 0.67 0.68068
Target:  5'- cGUCGAuaCCGUUgUCGCGaUCGGCGUCUc -3'
miRNA:   3'- -CAGCU--GGUAG-AGCGUcAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 21383 0.73 0.340469
Target:  5'- cGUCGguGCCAgCUCGggcaugaucCGGUCGACGUCCa -3'
miRNA:   3'- -CAGC--UGGUaGAGC---------GUCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 20444 0.66 0.744371
Target:  5'- aGUCGucaACCGUCUC--AGUCGGCGaCCg -3'
miRNA:   3'- -CAGC---UGGUAGAGcgUCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 19079 0.66 0.774859
Target:  5'- -gCGGCCGUCUac--GUCGACGUCg- -3'
miRNA:   3'- caGCUGGUAGAgcguCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 18347 0.68 0.603348
Target:  5'- uUCGACCAUCccgacguUCGCggGGUCGACGgCUc -3'
miRNA:   3'- cAGCUGGUAG-------AGCG--UCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 18247 0.66 0.738143
Target:  5'- aGUUGGCCAUCcCGaugacgucuucgaacCGGUCGACGUUg- -3'
miRNA:   3'- -CAGCUGGUAGaGC---------------GUCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 17464 0.67 0.68068
Target:  5'- cGUCGACgGgaucaaCUCGUucgCGACGUCCg -3'
miRNA:   3'- -CAGCUGgUa-----GAGCGucaGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 17257 0.66 0.774859
Target:  5'- -gCGGCCGg--UGCAGUCGGCGaugCCc -3'
miRNA:   3'- caGCUGGUagaGCGUCAGCUGCa--GGa -5'
16346 5' -55.1 NC_004084.1 + 16629 0.71 0.467726
Target:  5'- gGUCGAUCGUgacgccCUCGUcGUCGACGUCg- -3'
miRNA:   3'- -CAGCUGGUA------GAGCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 16393 0.71 0.44803
Target:  5'- uGUCGACCGcCUCGCucgCGACGgCCa -3'
miRNA:   3'- -CAGCUGGUaGAGCGucaGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 16259 0.66 0.764827
Target:  5'- cUCGACgGUUcUGCAGUCGAgugcaGUCCc -3'
miRNA:   3'- cAGCUGgUAGaGCGUCAGCUg----CAGGa -5'
16346 5' -55.1 NC_004084.1 + 15669 0.74 0.32446
Target:  5'- -cCGACCAUCUC-CGGgcCGAUGUCCUu -3'
miRNA:   3'- caGCUGGUAGAGcGUCa-GCUGCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.