Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16346 | 5' | -55.1 | NC_004084.1 | + | 5160 | 0.66 | 0.75466 |
Target: 5'- -cCGGCCcgAUCUCGUcgccGUCGACGaCCg -3' miRNA: 3'- caGCUGG--UAGAGCGu---CAGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 1416 | 0.66 | 0.75466 |
Target: 5'- cGUCG-CCAuUCUCgGC-GUCGcCGUCCUc -3' miRNA: 3'- -CAGCuGGU-AGAG-CGuCAGCuGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 48405 | 0.66 | 0.753637 |
Target: 5'- aUCGuggccGCCAUCUCGgAgaucuucGUCGACGUCg- -3' miRNA: 3'- cAGC-----UGGUAGAGCgU-------CAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 9237 | 0.66 | 0.744371 |
Target: 5'- cUCGAUCAgggcguccagcgUCUCGgGGUCGuCGUUCg -3' miRNA: 3'- cAGCUGGU------------AGAGCgUCAGCuGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 57105 | 0.66 | 0.744371 |
Target: 5'- --aGACCGcCUCGaucCAGUCGAggaCGUCCUc -3' miRNA: 3'- cagCUGGUaGAGC---GUCAGCU---GCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 18247 | 0.66 | 0.738143 |
Target: 5'- aGUUGGCCAUCcCGaugacgucuucgaacCGGUCGACGUUg- -3' miRNA: 3'- -CAGCUGGUAGaGC---------------GUCAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 29768 | 0.66 | 0.73397 |
Target: 5'- -aUGACCGUCcugcaUCGCgacgGGUCGGCGUacaCCUa -3' miRNA: 3'- caGCUGGUAG-----AGCG----UCAGCUGCA---GGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 51134 | 0.66 | 0.73397 |
Target: 5'- uGUCGuCCuugcucauggugAUCUCGguGUCGGugucgcucuCGUCCUg -3' miRNA: 3'- -CAGCuGG------------UAGAGCguCAGCU---------GCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 52565 | 0.67 | 0.68068 |
Target: 5'- cGUCGAUCGUCUUGaucgCGACGUgCUu -3' miRNA: 3'- -CAGCUGGUAGAGCgucaGCUGCAgGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 17464 | 0.67 | 0.68068 |
Target: 5'- cGUCGACgGgaucaaCUCGUucgCGACGUCCg -3' miRNA: 3'- -CAGCUGgUa-----GAGCGucaGCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 48913 | 0.67 | 0.669842 |
Target: 5'- gGUCGGCCAcgaCUUcCGGUCGGCG-CCg -3' miRNA: 3'- -CAGCUGGUa--GAGcGUCAGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 28306 | 0.68 | 0.648072 |
Target: 5'- -cCGGCCcgCUCccCAG-CGACGUCCg -3' miRNA: 3'- caGCUGGuaGAGc-GUCaGCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 11709 | 0.68 | 0.615333 |
Target: 5'- -cCGACCAcUCgUCGCGGUaGACGUCg- -3' miRNA: 3'- caGCUGGU-AG-AGCGUCAgCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 18347 | 0.68 | 0.603348 |
Target: 5'- uUCGACCAUCccgacguUCGCggGGUCGACGgCUc -3' miRNA: 3'- cAGCUGGUAG-------AGCG--UCAGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 35826 | 0.66 | 0.764827 |
Target: 5'- -aCcACCGUCUCGuCGG-CGACGUCg- -3' miRNA: 3'- caGcUGGUAGAGC-GUCaGCUGCAGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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