miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 17464 0.67 0.68068
Target:  5'- cGUCGACgGgaucaaCUCGUucgCGACGUCCg -3'
miRNA:   3'- -CAGCUGgUa-----GAGCGucaGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 52565 0.67 0.68068
Target:  5'- cGUCGAUCGUCUUGaucgCGACGUgCUu -3'
miRNA:   3'- -CAGCUGGUAGAGCgucaGCUGCAgGA- -5'
16346 5' -55.1 NC_004084.1 + 42650 0.67 0.68068
Target:  5'- aGUCGGCgg---CGCAGUCcgacGACGUCCUc -3'
miRNA:   3'- -CAGCUGguagaGCGUCAG----CUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 21880 0.67 0.68068
Target:  5'- cGUCGAuaCCGUUgUCGCGaUCGGCGUCUc -3'
miRNA:   3'- -CAGCU--GGUAG-AGCGUcAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 48913 0.67 0.669842
Target:  5'- gGUCGGCCAcgaCUUcCGGUCGGCG-CCg -3'
miRNA:   3'- -CAGCUGGUa--GAGcGUCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 28757 0.67 0.669842
Target:  5'- aGUCgGGCCAuguaccagcugUCcgCGCGgucGUCGACGUCCg -3'
miRNA:   3'- -CAG-CUGGU-----------AGa-GCGU---CAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 28306 0.68 0.648072
Target:  5'- -cCGGCCcgCUCccCAG-CGACGUCCg -3'
miRNA:   3'- caGCUGGuaGAGc-GUCaGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 49325 0.68 0.648072
Target:  5'- cGUCGACa---UCGCccGGUCGGCGUaCCg -3'
miRNA:   3'- -CAGCUGguagAGCG--UCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 12640 0.68 0.615333
Target:  5'- gGUCaACCA-CUCGCagaguacgaAGUUGACGUCCc -3'
miRNA:   3'- -CAGcUGGUaGAGCG---------UCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 11709 0.68 0.615333
Target:  5'- -cCGACCAcUCgUCGCGGUaGACGUCg- -3'
miRNA:   3'- caGCUGGU-AG-AGCGUCAgCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 47255 0.68 0.608793
Target:  5'- -aCGACCggCUCGCcggcgccuacuacgaGGUCGAcgaCGUCCa -3'
miRNA:   3'- caGCUGGuaGAGCG---------------UCAGCU---GCAGGa -5'
16346 5' -55.1 NC_004084.1 + 18347 0.68 0.603348
Target:  5'- uUCGACCAUCccgacguUCGCggGGUCGACGgCUc -3'
miRNA:   3'- cAGCUGGUAG-------AGCG--UCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 36225 0.69 0.593564
Target:  5'- cGUUGugCucggagaaCUCGCcuaccgGGUCGACGUCCUc -3'
miRNA:   3'- -CAGCugGua------GAGCG------UCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 49144 0.69 0.593564
Target:  5'- cUCGACCGUCUCuGUAG-CGGCGgcaauguacgucUCCa -3'
miRNA:   3'- cAGCUGGUAGAG-CGUCaGCUGC------------AGGa -5'
16346 5' -55.1 NC_004084.1 + 29070 0.69 0.592478
Target:  5'- cGUCGACCAg--CGCgAGUUcgagagcgcguggGACGUCCUc -3'
miRNA:   3'- -CAGCUGGUagaGCG-UCAG-------------CUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 26265 0.69 0.590307
Target:  5'- cGUUGAUCAUCgUcucgugcgacgggaCGCAGUCGACcUCCUg -3'
miRNA:   3'- -CAGCUGGUAG-A--------------GCGUCAGCUGcAGGA- -5'
16346 5' -55.1 NC_004084.1 + 10989 0.69 0.56117
Target:  5'- aUCgGAUCGUCUUGUcGcCGACGUCCUu -3'
miRNA:   3'- cAG-CUGGUAGAGCGuCaGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 882 0.7 0.529278
Target:  5'- cGUCG-CCGUCggaaucgguaUCGCuGUCGGCGUCg- -3'
miRNA:   3'- -CAGCuGGUAG----------AGCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 52930 0.7 0.518793
Target:  5'- cGUCGACUgcgacgAUCUgGCcGUCGGCGUCg- -3'
miRNA:   3'- -CAGCUGG------UAGAgCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 30593 0.7 0.508391
Target:  5'- -gUGACC-UCgcggacgcCGCGGUCGAUGUCCa -3'
miRNA:   3'- caGCUGGuAGa-------GCGUCAGCUGCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.