miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 53150 0.66 0.756446
Target:  5'- -gCGGGACGUCgUCGACgagGCCGa- -3'
miRNA:   3'- agGCCUUGCGGaAGCUGaagCGGCag -5'
16348 5' -55.6 NC_004084.1 + 22403 0.66 0.756446
Target:  5'- aCCGGAcgaucACGCUUcUCGGCUccgacgaCGCgGUCg -3'
miRNA:   3'- aGGCCU-----UGCGGA-AGCUGAa------GCGgCAG- -5'
16348 5' -55.6 NC_004084.1 + 28939 0.66 0.756446
Target:  5'- cUCgGGAGCGCg-UCGACagCGUCGa- -3'
miRNA:   3'- -AGgCCUUGCGgaAGCUGaaGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 46729 0.66 0.756446
Target:  5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3'
miRNA:   3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50982 0.66 0.756446
Target:  5'- cUCCGaGGucuCGCCaccgUCGGCaUCGCCcucGUCg -3'
miRNA:   3'- -AGGC-CUu--GCGGa---AGCUGaAGCGG---CAG- -5'
16348 5' -55.6 NC_004084.1 + 28071 0.66 0.756446
Target:  5'- aUCCG--ACGCCgUCGGCcaccUCGCCGa- -3'
miRNA:   3'- -AGGCcuUGCGGaAGCUGa---AGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 1985 0.66 0.756446
Target:  5'- -aCGGGAUGCa---GACUaCGUCGUCg -3'
miRNA:   3'- agGCCUUGCGgaagCUGAaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 55913 0.66 0.746229
Target:  5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3'
miRNA:   3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 39596 0.66 0.746229
Target:  5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3'
miRNA:   3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 984 0.66 0.746229
Target:  5'- aCCGGGACgGCCUgagaCGACgaucaCGCUGg- -3'
miRNA:   3'- aGGCCUUG-CGGAa---GCUGaa---GCGGCag -5'
16348 5' -55.6 NC_004084.1 + 37939 0.66 0.744172
Target:  5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3'
miRNA:   3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5'
16348 5' -55.6 NC_004084.1 + 35944 0.66 0.735899
Target:  5'- cCCGGcguCGCCggggUCGGCg--GCCGUg -3'
miRNA:   3'- aGGCCuu-GCGGa---AGCUGaagCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 25714 0.66 0.735899
Target:  5'- aUCCacgcuagaGAGCGUCUUaccgucaGACUUCGCCGcCu -3'
miRNA:   3'- -AGGc-------CUUGCGGAAg------CUGAAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 11880 0.66 0.735899
Target:  5'- aUCCGG-ACGUCgaaGACUUCGaugccgagaUCGUCa -3'
miRNA:   3'- -AGGCCuUGCGGaagCUGAAGC---------GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 55840 0.66 0.725467
Target:  5'- gUCCGGGAUGCCgucaaCGACg-CGgaCGUCu -3'
miRNA:   3'- -AGGCCUUGCGGaa---GCUGaaGCg-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 10375 0.66 0.725467
Target:  5'- gUCCGG-AUGagUUCGACgucgagcUCGUCGUCg -3'
miRNA:   3'- -AGGCCuUGCggAAGCUGa------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 20091 0.66 0.714944
Target:  5'- aCCGGAagACGaCCgUCGAUaUCGaCGUCa -3'
miRNA:   3'- aGGCCU--UGC-GGaAGCUGaAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 54228 0.66 0.714944
Target:  5'- gUCGGAucucgACGUCggagCGAUcagCGCCGUCg -3'
miRNA:   3'- aGGCCU-----UGCGGaa--GCUGaa-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 48023 0.66 0.708592
Target:  5'- cUCgCGGAGuucuucgcgcucgauCGCCUgcUCGACUcUCGUCGUUc -3'
miRNA:   3'- -AG-GCCUU---------------GCGGA--AGCUGA-AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 28161 0.66 0.704343
Target:  5'- gCUGGAAUaguccguccucgGCCUguUCGACgUCGCCG-Cg -3'
miRNA:   3'- aGGCCUUG------------CGGA--AGCUGaAGCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.