miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 28161 0.66 0.704343
Target:  5'- gCUGGAAUaguccguccucgGCCUguUCGACgUCGCCG-Cg -3'
miRNA:   3'- aGGCCUUG------------CGGA--AGCUGaAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 20091 0.66 0.714944
Target:  5'- aCCGGAagACGaCCgUCGAUaUCGaCGUCa -3'
miRNA:   3'- aGGCCU--UGC-GGaAGCUGaAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 26016 0.67 0.690459
Target:  5'- aUCCGGAcuguugucguaGCCUUCGagcccgaGCUcgaUCGUCGUCu -3'
miRNA:   3'- -AGGCCUug---------CGGAAGC-------UGA---AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 9449 0.67 0.672168
Target:  5'- -gCGGGACGCCguagUCGGCggcaUCGUguuUGUCc -3'
miRNA:   3'- agGCCUUGCGGa---AGCUGa---AGCG---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 51522 0.67 0.672168
Target:  5'- gUCCGacucGAGCGCCauUUCGAUcgCGUCGUg -3'
miRNA:   3'- -AGGC----CUUGCGG--AAGCUGaaGCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 16660 0.67 0.693672
Target:  5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3'
miRNA:   3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 43718 0.67 0.693672
Target:  5'- cUCCaGGACGCCaUCGAUggCGaCCGg- -3'
miRNA:   3'- -AGGcCUUGCGGaAGCUGaaGC-GGCag -5'
16348 5' -55.6 NC_004084.1 + 57960 0.67 0.661355
Target:  5'- aCCGGGcaACGuCCUgggCGucCUcCGCCGUCu -3'
miRNA:   3'- aGGCCU--UGC-GGAa--GCu-GAaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 15967 0.67 0.639661
Target:  5'- cUCCGGuucuGACggGCggUUGACUUCGcCCGUCu -3'
miRNA:   3'- -AGGCC----UUG--CGgaAGCUGAAGC-GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 5147 0.67 0.672168
Target:  5'- gCCaGGACGUCgccCGGCccgaucucgUCGCCGUCg -3'
miRNA:   3'- aGGcCUUGCGGaa-GCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 27251 0.67 0.672168
Target:  5'- aCCGGAAcCGCgcUCGACgagaucUCGCgGUCc -3'
miRNA:   3'- aGGCCUU-GCGgaAGCUGa-----AGCGgCAG- -5'
16348 5' -55.6 NC_004084.1 + 28795 0.67 0.644004
Target:  5'- gUCCGGAGCcgacagccagguGCCguugUgGGCgagcaucgcgaccggUUCGCCGUCu -3'
miRNA:   3'- -AGGCCUUG------------CGGa---AgCUG---------------AAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50773 0.68 0.611429
Target:  5'- gUCCGGcucuuCGUCagCGuucuucucggugccaGCUUCGCCGUCg -3'
miRNA:   3'- -AGGCCuu---GCGGaaGC---------------UGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 44224 0.68 0.61794
Target:  5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3'
miRNA:   3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 21500 0.68 0.607093
Target:  5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3'
miRNA:   3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 17554 0.68 0.58547
Target:  5'- uUCCGGAACGUCgaucUCGACg--GCCaGUUc -3'
miRNA:   3'- -AGGCCUUGCGGa---AGCUGaagCGG-CAG- -5'
16348 5' -55.6 NC_004084.1 + 35871 0.68 0.581162
Target:  5'- aUCCGGAccgcgugaucgguCGUCUUCGGCcggaggcgaUCGUCGUCg -3'
miRNA:   3'- -AGGCCUu------------GCGGAAGCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 861 0.68 0.628799
Target:  5'- -gUGGAAagaGUCagucgUCGACgUCGCCGUCg -3'
miRNA:   3'- agGCCUUg--CGGa----AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 56923 0.68 0.628799
Target:  5'- gUCGGGACGgcggaCUUCGuagUCGUCGUCg -3'
miRNA:   3'- aGGCCUUGCg----GAAGCugaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 27006 0.69 0.55334
Target:  5'- gCCGcguCGUCUgCGACUUCGCCGa- -3'
miRNA:   3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.