Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 4908 | 0.69 | 0.574711 |
Target: 5'- aCCGcagucuacCGCaCgaCGACUUCGCCGUCg -3' miRNA: 3'- aGGCcuu-----GCG-GaaGCUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 36074 | 0.69 | 0.563999 |
Target: 5'- gUCCGGuaguucuCGCCcUCGAgUuccUCGUCGUCu -3' miRNA: 3'- -AGGCCuu-----GCGGaAGCUgA---AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 36425 | 0.69 | 0.532212 |
Target: 5'- gUCCGc-GCGUCgUCGACguaCGCCGUCu -3' miRNA: 3'- -AGGCcuUGCGGaAGCUGaa-GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 37186 | 0.69 | 0.542742 |
Target: 5'- aCCGGGAuaaacgauguCGUCacCGGCUUCGCCGcCg -3' miRNA: 3'- aGGCCUU----------GCGGaaGCUGAAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 3873 | 0.69 | 0.542742 |
Target: 5'- cUCGGugauacAGCGCCggaCGAUcUCGCCGUCc -3' miRNA: 3'- aGGCC------UUGCGGaa-GCUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 57121 | 0.69 | 0.542742 |
Target: 5'- gUCGaGGACGUCcUCGGugUCGCCGUCu -3' miRNA: 3'- aGGC-CUUGCGGaAGCUgaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 51657 | 0.69 | 0.563999 |
Target: 5'- cUCGGAcUGcCCUUCcgcggGACUUaCGCCGUCa -3' miRNA: 3'- aGGCCUuGC-GGAAG-----CUGAA-GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 29280 | 0.69 | 0.55334 |
Target: 5'- cCCGGcAGCGCCag-GugUUCGgCGUCu -3' miRNA: 3'- aGGCC-UUGCGGaagCugAAGCgGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28107 | 0.69 | 0.574711 |
Target: 5'- gUUCGGGguGCGCC-UCGACga-GCgCGUCa -3' miRNA: 3'- -AGGCCU--UGCGGaAGCUGaagCG-GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 27006 | 0.69 | 0.55334 |
Target: 5'- gCCGcguCGUCUgCGACUUCGCCGa- -3' miRNA: 3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 10519 | 0.7 | 0.501093 |
Target: 5'- cUCgCGGAGCGaCCgUCGACgUUGCCGa- -3' miRNA: 3'- -AG-GCCUUGC-GGaAGCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 39056 | 0.7 | 0.490896 |
Target: 5'- aUCGGGACGUUgUCGAUcagcaggUCGCUGUCg -3' miRNA: 3'- aGGCCUUGCGGaAGCUGa------AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 22154 | 0.7 | 0.490896 |
Target: 5'- aCCGcGAGCGCC-UCGGCgcacUCGaggaCGUCg -3' miRNA: 3'- aGGC-CUUGCGGaAGCUGa---AGCg---GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 32210 | 0.7 | 0.501093 |
Target: 5'- --aGGAGCGCCUcgagaugcuccUCGACgaCGCCGa- -3' miRNA: 3'- aggCCUUGCGGA-----------AGCUGaaGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 18131 | 0.7 | 0.501093 |
Target: 5'- aUCCGGAugGaCUggaaCGACgUCGCCGg- -3' miRNA: 3'- -AGGCCUugCgGAa---GCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 58184 | 0.7 | 0.502117 |
Target: 5'- gCCGGcugcgugcaucgcuCGCCggUCGACUUCGCUggGUCa -3' miRNA: 3'- aGGCCuu------------GCGGa-AGCUGAAGCGG--CAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 6780 | 0.71 | 0.459927 |
Target: 5'- -gCGGAACGCCgaagacgUCGgggaucaGCUcccgCGCCGUCg -3' miRNA: 3'- agGCCUUGCGGa------AGC-------UGAa---GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 21617 | 0.71 | 0.46091 |
Target: 5'- cUCGGGACGaUCUUCGACUUgGaCCGcCa -3' miRNA: 3'- aGGCCUUGC-GGAAGCUGAAgC-GGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 41250 | 0.71 | 0.413197 |
Target: 5'- cUCCcu--CGCCUUCGACgUCGCCGg- -3' miRNA: 3'- -AGGccuuGCGGAAGCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 1035 | 0.71 | 0.413197 |
Target: 5'- aUCgGGGGCGCgcUCGAgUUCGCCGa- -3' miRNA: 3'- -AGgCCUUGCGgaAGCUgAAGCGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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