Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 20097 | 0.72 | 0.404024 |
Target: 5'- aUCCGGugagaucGCGCUggaagUUGACgcCGCCGUCa -3' miRNA: 3'- -AGGCCu------UGCGGa----AGCUGaaGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 43757 | 0.72 | 0.404024 |
Target: 5'- gCCGGGACGCUcgcgggcaUCGACUgggcgcUCGCCGg- -3' miRNA: 3'- aGGCCUUGCGGa-------AGCUGA------AGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 36308 | 0.73 | 0.322812 |
Target: 5'- aCCGGGACGCCcUgaucgaugcccgugaCGACUUCGUCGa- -3' miRNA: 3'- aGGCCUUGCGGaA---------------GCUGAAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 58059 | 0.73 | 0.35178 |
Target: 5'- cCCGGuagGCGCCguguUCGACggCGuuGUCg -3' miRNA: 3'- aGGCCu--UGCGGa---AGCUGaaGCggCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46555 | 0.73 | 0.332266 |
Target: 5'- gUCCGGAuCGUCgucggucgugaacUCGAUaUCGCCGUCa -3' miRNA: 3'- -AGGCCUuGCGGa------------AGCUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 51090 | 0.74 | 0.289875 |
Target: 5'- cUCUGGGGCGUCUUCcaucGCUUUGuCCGUCu -3' miRNA: 3'- -AGGCCUUGCGGAAGc---UGAAGC-GGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 55336 | 0.75 | 0.24929 |
Target: 5'- gCCGGAACGCacgUCGACgagCGgcCCGUCg -3' miRNA: 3'- aGGCCUUGCGga-AGCUGaa-GC--GGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 1411 | 0.75 | 0.262271 |
Target: 5'- aCCGGcguCGCCauucUCGGCgUCGCCGUCc -3' miRNA: 3'- aGGCCuu-GCGGa---AGCUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46043 | 0.76 | 0.224923 |
Target: 5'- aCCGGAcccuCGCCUUCcGCUUCGUCGcCa -3' miRNA: 3'- aGGCCUu---GCGGAAGcUGAAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 49501 | 0.78 | 0.159343 |
Target: 5'- aUCCGGAuCGUCUUCGGCUUcCGCC-UCu -3' miRNA: 3'- -AGGCCUuGCGGAAGCUGAA-GCGGcAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 10989 | 0.81 | 0.107554 |
Target: 5'- aUCGGAucgucuugucgccgACGuCCUUCGGCUUCGUCGUCg -3' miRNA: 3'- aGGCCU--------------UGC-GGAAGCUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50747 | 0.9 | 0.025887 |
Target: 5'- --aGGAACGCCUUCuuGACUUCGCCGUCg -3' miRNA: 3'- aggCCUUGCGGAAG--CUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 9135 | 1.11 | 0.000828 |
Target: 5'- aUCCGGAACGCCUUCGACUUCGCCGUCg -3' miRNA: 3'- -AGGCCUUGCGGAAGCUGAAGCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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