miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 9135 1.11 0.000828
Target:  5'- aUCCGGAACGCCUUCGACUUCGCCGUCg -3'
miRNA:   3'- -AGGCCUUGCGGAAGCUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50747 0.9 0.025887
Target:  5'- --aGGAACGCCUUCuuGACUUCGCCGUCg -3'
miRNA:   3'- aggCCUUGCGGAAG--CUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 10989 0.81 0.107554
Target:  5'- aUCGGAucgucuugucgccgACGuCCUUCGGCUUCGUCGUCg -3'
miRNA:   3'- aGGCCU--------------UGC-GGAAGCUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 49501 0.78 0.159343
Target:  5'- aUCCGGAuCGUCUUCGGCUUcCGCC-UCu -3'
miRNA:   3'- -AGGCCUuGCGGAAGCUGAA-GCGGcAG- -5'
16348 5' -55.6 NC_004084.1 + 46043 0.76 0.224923
Target:  5'- aCCGGAcccuCGCCUUCcGCUUCGUCGcCa -3'
miRNA:   3'- aGGCCUu---GCGGAAGcUGAAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 55336 0.75 0.24929
Target:  5'- gCCGGAACGCacgUCGACgagCGgcCCGUCg -3'
miRNA:   3'- aGGCCUUGCGga-AGCUGaa-GC--GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 1411 0.75 0.262271
Target:  5'- aCCGGcguCGCCauucUCGGCgUCGCCGUCc -3'
miRNA:   3'- aGGCCuu-GCGGa---AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 51090 0.74 0.289875
Target:  5'- cUCUGGGGCGUCUUCcaucGCUUUGuCCGUCu -3'
miRNA:   3'- -AGGCCUUGCGGAAGc---UGAAGC-GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 58059 0.73 0.35178
Target:  5'- cCCGGuagGCGCCguguUCGACggCGuuGUCg -3'
miRNA:   3'- aGGCCu--UGCGGa---AGCUGaaGCggCAG- -5'
16348 5' -55.6 NC_004084.1 + 46555 0.73 0.332266
Target:  5'- gUCCGGAuCGUCgucggucgugaacUCGAUaUCGCCGUCa -3'
miRNA:   3'- -AGGCCUuGCGGa------------AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 36308 0.73 0.322812
Target:  5'- aCCGGGACGCCcUgaucgaugcccgugaCGACUUCGUCGa- -3'
miRNA:   3'- aGGCCUUGCGGaA---------------GCUGAAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 43757 0.72 0.404024
Target:  5'- gCCGGGACGCUcgcgggcaUCGACUgggcgcUCGCCGg- -3'
miRNA:   3'- aGGCCUUGCGGa-------AGCUGA------AGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 20097 0.72 0.404024
Target:  5'- aUCCGGugagaucGCGCUggaagUUGACgcCGCCGUCa -3'
miRNA:   3'- -AGGCCu------UGCGGa----AGCUGaaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 21617 0.71 0.46091
Target:  5'- cUCGGGACGaUCUUCGACUUgGaCCGcCa -3'
miRNA:   3'- aGGCCUUGC-GGAAGCUGAAgC-GGCaG- -5'
16348 5' -55.6 NC_004084.1 + 41250 0.71 0.413197
Target:  5'- cUCCcu--CGCCUUCGACgUCGCCGg- -3'
miRNA:   3'- -AGGccuuGCGGAAGCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 1035 0.71 0.413197
Target:  5'- aUCgGGGGCGCgcUCGAgUUCGCCGa- -3'
miRNA:   3'- -AGgCCUUGCGgaAGCUgAAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 6780 0.71 0.459927
Target:  5'- -gCGGAACGCCgaagacgUCGgggaucaGCUcccgCGCCGUCg -3'
miRNA:   3'- agGCCUUGCGGa------AGC-------UGAa---GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 22154 0.7 0.490896
Target:  5'- aCCGcGAGCGCC-UCGGCgcacUCGaggaCGUCg -3'
miRNA:   3'- aGGC-CUUGCGGaAGCUGa---AGCg---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 58184 0.7 0.502117
Target:  5'- gCCGGcugcgugcaucgcuCGCCggUCGACUUCGCUggGUCa -3'
miRNA:   3'- aGGCCuu------------GCGGa-AGCUGAAGCGG--CAG- -5'
16348 5' -55.6 NC_004084.1 + 18131 0.7 0.501093
Target:  5'- aUCCGGAugGaCUggaaCGACgUCGCCGg- -3'
miRNA:   3'- -AGGCCUugCgGAa---GCUGaAGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.