miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 10519 0.7 0.501093
Target:  5'- cUCgCGGAGCGaCCgUCGACgUUGCCGa- -3'
miRNA:   3'- -AG-GCCUUGC-GGaAGCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 22154 0.7 0.490896
Target:  5'- aCCGcGAGCGCC-UCGGCgcacUCGaggaCGUCg -3'
miRNA:   3'- aGGC-CUUGCGGaAGCUGa---AGCg---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 32210 0.7 0.501093
Target:  5'- --aGGAGCGCCUcgagaugcuccUCGACgaCGCCGa- -3'
miRNA:   3'- aggCCUUGCGGA-----------AGCUGaaGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 3873 0.69 0.542742
Target:  5'- cUCGGugauacAGCGCCggaCGAUcUCGCCGUCc -3'
miRNA:   3'- aGGCC------UUGCGGaa-GCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 27006 0.69 0.55334
Target:  5'- gCCGcguCGUCUgCGACUUCGCCGa- -3'
miRNA:   3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 29280 0.69 0.55334
Target:  5'- cCCGGcAGCGCCag-GugUUCGgCGUCu -3'
miRNA:   3'- aGGCC-UUGCGGaagCugAAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 28107 0.69 0.574711
Target:  5'- gUUCGGGguGCGCC-UCGACga-GCgCGUCa -3'
miRNA:   3'- -AGGCCU--UGCGGaAGCUGaagCG-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 1967 0.69 0.574711
Target:  5'- aCCGaGAgcGCGCCgUCGAgaUCGUCGUUc -3'
miRNA:   3'- aGGC-CU--UGCGGaAGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 37186 0.69 0.542742
Target:  5'- aCCGGGAuaaacgauguCGUCacCGGCUUCGCCGcCg -3'
miRNA:   3'- aGGCCUU----------GCGGaaGCUGAAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 36425 0.69 0.532212
Target:  5'- gUCCGc-GCGUCgUCGACguaCGCCGUCu -3'
miRNA:   3'- -AGGCcuUGCGGaAGCUGaa-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 4908 0.69 0.574711
Target:  5'- aCCGcagucuacCGCaCgaCGACUUCGCCGUCg -3'
miRNA:   3'- aGGCcuu-----GCG-GaaGCUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 36074 0.69 0.563999
Target:  5'- gUCCGGuaguucuCGCCcUCGAgUuccUCGUCGUCu -3'
miRNA:   3'- -AGGCCuu-----GCGGaAGCUgA---AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 57121 0.69 0.542742
Target:  5'- gUCGaGGACGUCcUCGGugUCGCCGUCu -3'
miRNA:   3'- aGGC-CUUGCGGaAGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 51657 0.69 0.563999
Target:  5'- cUCGGAcUGcCCUUCcgcggGACUUaCGCCGUCa -3'
miRNA:   3'- aGGCCUuGC-GGAAG-----CUGAA-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 861 0.68 0.628799
Target:  5'- -gUGGAAagaGUCagucgUCGACgUCGCCGUCg -3'
miRNA:   3'- agGCCUUg--CGGa----AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 35871 0.68 0.581162
Target:  5'- aUCCGGAccgcgugaucgguCGUCUUCGGCcggaggcgaUCGUCGUCg -3'
miRNA:   3'- -AGGCCUu------------GCGGAAGCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 17554 0.68 0.58547
Target:  5'- uUCCGGAACGUCgaucUCGACg--GCCaGUUc -3'
miRNA:   3'- -AGGCCUUGCGGa---AGCUGaagCGG-CAG- -5'
16348 5' -55.6 NC_004084.1 + 50773 0.68 0.611429
Target:  5'- gUCCGGcucuuCGUCagCGuucuucucggugccaGCUUCGCCGUCg -3'
miRNA:   3'- -AGGCCuu---GCGGaaGC---------------UGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 21500 0.68 0.607093
Target:  5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3'
miRNA:   3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 44224 0.68 0.61794
Target:  5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3'
miRNA:   3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.