miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 21500 0.68 0.607093
Target:  5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3'
miRNA:   3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 26016 0.67 0.690459
Target:  5'- aUCCGGAcuguugucguaGCCUUCGagcccgaGCUcgaUCGUCGUCu -3'
miRNA:   3'- -AGGCCUug---------CGGAAGC-------UGA---AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 16660 0.67 0.693672
Target:  5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3'
miRNA:   3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 27251 0.67 0.672168
Target:  5'- aCCGGAAcCGCgcUCGACgagaucUCGCgGUCc -3'
miRNA:   3'- aGGCCUU-GCGgaAGCUGa-----AGCGgCAG- -5'
16348 5' -55.6 NC_004084.1 + 9449 0.67 0.672168
Target:  5'- -gCGGGACGCCguagUCGGCggcaUCGUguuUGUCc -3'
miRNA:   3'- agGCCUUGCGGa---AGCUGa---AGCG---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 43718 0.67 0.693672
Target:  5'- cUCCaGGACGCCaUCGAUggCGaCCGg- -3'
miRNA:   3'- -AGGcCUUGCGGaAGCUGaaGC-GGCag -5'
16348 5' -55.6 NC_004084.1 + 28795 0.67 0.644004
Target:  5'- gUCCGGAGCcgacagccagguGCCguugUgGGCgagcaucgcgaccggUUCGCCGUCu -3'
miRNA:   3'- -AGGCCUUG------------CGGa---AgCUG---------------AAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 15967 0.67 0.639661
Target:  5'- cUCCGGuucuGACggGCggUUGACUUCGcCCGUCu -3'
miRNA:   3'- -AGGCC----UUG--CGgaAGCUGAAGC-GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 51522 0.67 0.672168
Target:  5'- gUCCGacucGAGCGCCauUUCGAUcgCGUCGUg -3'
miRNA:   3'- -AGGC----CUUGCGG--AAGCUGaaGCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 5147 0.67 0.672168
Target:  5'- gCCaGGACGUCgccCGGCccgaucucgUCGCCGUCg -3'
miRNA:   3'- aGGcCUUGCGGaa-GCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 57960 0.67 0.661355
Target:  5'- aCCGGGcaACGuCCUgggCGucCUcCGCCGUCu -3'
miRNA:   3'- aGGCCU--UGC-GGAa--GCu-GAaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 10375 0.66 0.725467
Target:  5'- gUCCGG-AUGagUUCGACgucgagcUCGUCGUCg -3'
miRNA:   3'- -AGGCCuUGCggAAGCUGa------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 53150 0.66 0.756446
Target:  5'- -gCGGGACGUCgUCGACgagGCCGa- -3'
miRNA:   3'- agGCCUUGCGGaAGCUGaagCGGCag -5'
16348 5' -55.6 NC_004084.1 + 1985 0.66 0.756446
Target:  5'- -aCGGGAUGCa---GACUaCGUCGUCg -3'
miRNA:   3'- agGCCUUGCGgaagCUGAaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50982 0.66 0.756446
Target:  5'- cUCCGaGGucuCGCCaccgUCGGCaUCGCCcucGUCg -3'
miRNA:   3'- -AGGC-CUu--GCGGa---AGCUGaAGCGG---CAG- -5'
16348 5' -55.6 NC_004084.1 + 28071 0.66 0.756446
Target:  5'- aUCCG--ACGCCgUCGGCcaccUCGCCGa- -3'
miRNA:   3'- -AGGCcuUGCGGaAGCUGa---AGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 46729 0.66 0.756446
Target:  5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3'
miRNA:   3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 39596 0.66 0.746229
Target:  5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3'
miRNA:   3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 55913 0.66 0.746229
Target:  5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3'
miRNA:   3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 37939 0.66 0.744172
Target:  5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3'
miRNA:   3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.