Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 1985 | 0.66 | 0.756446 |
Target: 5'- -aCGGGAUGCa---GACUaCGUCGUCg -3' miRNA: 3'- agGCCUUGCGgaagCUGAaGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50955 | 0.66 | 0.704343 |
Target: 5'- gCCGu--CGCCgcUCGAg-UCGCCGUCg -3' miRNA: 3'- aGGCcuuGCGGa-AGCUgaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 48023 | 0.66 | 0.708592 |
Target: 5'- cUCgCGGAGuucuucgcgcucgauCGCCUgcUCGACUcUCGUCGUUc -3' miRNA: 3'- -AG-GCCUU---------------GCGGA--AGCUGA-AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 54228 | 0.66 | 0.714944 |
Target: 5'- gUCGGAucucgACGUCggagCGAUcagCGCCGUCg -3' miRNA: 3'- aGGCCU-----UGCGGaa--GCUGaa-GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 55840 | 0.66 | 0.725467 |
Target: 5'- gUCCGGGAUGCCgucaaCGACg-CGgaCGUCu -3' miRNA: 3'- -AGGCCUUGCGGaa---GCUGaaGCg-GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 10375 | 0.66 | 0.725467 |
Target: 5'- gUCCGG-AUGagUUCGACgucgagcUCGUCGUCg -3' miRNA: 3'- -AGGCCuUGCggAAGCUGa------AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 35944 | 0.66 | 0.735899 |
Target: 5'- cCCGGcguCGCCggggUCGGCg--GCCGUg -3' miRNA: 3'- aGGCCuu-GCGGa---AGCUGaagCGGCAg -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 37939 | 0.66 | 0.744172 |
Target: 5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3' miRNA: 3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 55913 | 0.66 | 0.746229 |
Target: 5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3' miRNA: 3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46729 | 0.66 | 0.756446 |
Target: 5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3' miRNA: 3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50982 | 0.66 | 0.756446 |
Target: 5'- cUCCGaGGucuCGCCaccgUCGGCaUCGCCcucGUCg -3' miRNA: 3'- -AGGC-CUu--GCGGa---AGCUGaAGCGG---CAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28071 | 0.66 | 0.756446 |
Target: 5'- aUCCG--ACGCCgUCGGCcaccUCGCCGa- -3' miRNA: 3'- -AGGCcuUGCGGaAGCUGa---AGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 39596 | 0.66 | 0.746229 |
Target: 5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3' miRNA: 3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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