Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 18131 | 0.7 | 0.501093 |
Target: 5'- aUCCGGAugGaCUggaaCGACgUCGCCGg- -3' miRNA: 3'- -AGGCCUugCgGAa---GCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 10519 | 0.7 | 0.501093 |
Target: 5'- cUCgCGGAGCGaCCgUCGACgUUGCCGa- -3' miRNA: 3'- -AG-GCCUUGC-GGaAGCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 58184 | 0.7 | 0.502117 |
Target: 5'- gCCGGcugcgugcaucgcuCGCCggUCGACUUCGCUggGUCa -3' miRNA: 3'- aGGCCuu------------GCGGa-AGCUGAAGCGG--CAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 36425 | 0.69 | 0.532212 |
Target: 5'- gUCCGc-GCGUCgUCGACguaCGCCGUCu -3' miRNA: 3'- -AGGCcuUGCGGaAGCUGaa-GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 37186 | 0.69 | 0.542742 |
Target: 5'- aCCGGGAuaaacgauguCGUCacCGGCUUCGCCGcCg -3' miRNA: 3'- aGGCCUU----------GCGGaaGCUGAAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 57121 | 0.69 | 0.542742 |
Target: 5'- gUCGaGGACGUCcUCGGugUCGCCGUCu -3' miRNA: 3'- aGGC-CUUGCGGaAGCUgaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 3873 | 0.69 | 0.542742 |
Target: 5'- cUCGGugauacAGCGCCggaCGAUcUCGCCGUCc -3' miRNA: 3'- aGGCC------UUGCGGaa-GCUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 27006 | 0.69 | 0.55334 |
Target: 5'- gCCGcguCGUCUgCGACUUCGCCGa- -3' miRNA: 3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 29280 | 0.69 | 0.55334 |
Target: 5'- cCCGGcAGCGCCag-GugUUCGgCGUCu -3' miRNA: 3'- aGGCC-UUGCGGaagCugAAGCgGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 51657 | 0.69 | 0.563999 |
Target: 5'- cUCGGAcUGcCCUUCcgcggGACUUaCGCCGUCa -3' miRNA: 3'- aGGCCUuGC-GGAAG-----CUGAA-GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 36074 | 0.69 | 0.563999 |
Target: 5'- gUCCGGuaguucuCGCCcUCGAgUuccUCGUCGUCu -3' miRNA: 3'- -AGGCCuu-----GCGGaAGCUgA---AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 4908 | 0.69 | 0.574711 |
Target: 5'- aCCGcagucuacCGCaCgaCGACUUCGCCGUCg -3' miRNA: 3'- aGGCcuu-----GCG-GaaGCUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 1967 | 0.69 | 0.574711 |
Target: 5'- aCCGaGAgcGCGCCgUCGAgaUCGUCGUUc -3' miRNA: 3'- aGGC-CU--UGCGGaAGCUgaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28107 | 0.69 | 0.574711 |
Target: 5'- gUUCGGGguGCGCC-UCGACga-GCgCGUCa -3' miRNA: 3'- -AGGCCU--UGCGGaAGCUGaagCG-GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 35871 | 0.68 | 0.581162 |
Target: 5'- aUCCGGAccgcgugaucgguCGUCUUCGGCcggaggcgaUCGUCGUCg -3' miRNA: 3'- -AGGCCUu------------GCGGAAGCUGa--------AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 17554 | 0.68 | 0.58547 |
Target: 5'- uUCCGGAACGUCgaucUCGACg--GCCaGUUc -3' miRNA: 3'- -AGGCCUUGCGGa---AGCUGaagCGG-CAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 21500 | 0.68 | 0.607093 |
Target: 5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3' miRNA: 3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50773 | 0.68 | 0.611429 |
Target: 5'- gUCCGGcucuuCGUCagCGuucuucucggugccaGCUUCGCCGUCg -3' miRNA: 3'- -AGGCCuu---GCGGaaGC---------------UGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 44224 | 0.68 | 0.61794 |
Target: 5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3' miRNA: 3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 861 | 0.68 | 0.628799 |
Target: 5'- -gUGGAAagaGUCagucgUCGACgUCGCCGUCg -3' miRNA: 3'- agGCCUUg--CGGa----AGCUGaAGCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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