miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 861 0.68 0.628799
Target:  5'- -gUGGAAagaGUCagucgUCGACgUCGCCGUCg -3'
miRNA:   3'- agGCCUUg--CGGa----AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 984 0.66 0.746229
Target:  5'- aCCGGGACgGCCUgagaCGACgaucaCGCUGg- -3'
miRNA:   3'- aGGCCUUG-CGGAa---GCUGaa---GCGGCag -5'
16348 5' -55.6 NC_004084.1 + 1035 0.71 0.413197
Target:  5'- aUCgGGGGCGCgcUCGAgUUCGCCGa- -3'
miRNA:   3'- -AGgCCUUGCGgaAGCUgAAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 1411 0.75 0.262271
Target:  5'- aCCGGcguCGCCauucUCGGCgUCGCCGUCc -3'
miRNA:   3'- aGGCCuu-GCGGa---AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 1967 0.69 0.574711
Target:  5'- aCCGaGAgcGCGCCgUCGAgaUCGUCGUUc -3'
miRNA:   3'- aGGC-CU--UGCGGaAGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 1985 0.66 0.756446
Target:  5'- -aCGGGAUGCa---GACUaCGUCGUCg -3'
miRNA:   3'- agGCCUUGCGgaagCUGAaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 3873 0.69 0.542742
Target:  5'- cUCGGugauacAGCGCCggaCGAUcUCGCCGUCc -3'
miRNA:   3'- aGGCC------UUGCGGaa-GCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 4908 0.69 0.574711
Target:  5'- aCCGcagucuacCGCaCgaCGACUUCGCCGUCg -3'
miRNA:   3'- aGGCcuu-----GCG-GaaGCUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 5147 0.67 0.672168
Target:  5'- gCCaGGACGUCgccCGGCccgaucucgUCGCCGUCg -3'
miRNA:   3'- aGGcCUUGCGGaa-GCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 6780 0.71 0.459927
Target:  5'- -gCGGAACGCCgaagacgUCGgggaucaGCUcccgCGCCGUCg -3'
miRNA:   3'- agGCCUUGCGGa------AGC-------UGAa---GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 9135 1.11 0.000828
Target:  5'- aUCCGGAACGCCUUCGACUUCGCCGUCg -3'
miRNA:   3'- -AGGCCUUGCGGAAGCUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 9449 0.67 0.672168
Target:  5'- -gCGGGACGCCguagUCGGCggcaUCGUguuUGUCc -3'
miRNA:   3'- agGCCUUGCGGa---AGCUGa---AGCG---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 10375 0.66 0.725467
Target:  5'- gUCCGG-AUGagUUCGACgucgagcUCGUCGUCg -3'
miRNA:   3'- -AGGCCuUGCggAAGCUGa------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 10519 0.7 0.501093
Target:  5'- cUCgCGGAGCGaCCgUCGACgUUGCCGa- -3'
miRNA:   3'- -AG-GCCUUGC-GGaAGCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 10989 0.81 0.107554
Target:  5'- aUCGGAucgucuugucgccgACGuCCUUCGGCUUCGUCGUCg -3'
miRNA:   3'- aGGCCU--------------UGC-GGAAGCUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 11880 0.66 0.735899
Target:  5'- aUCCGG-ACGUCgaaGACUUCGaugccgagaUCGUCa -3'
miRNA:   3'- -AGGCCuUGCGGaagCUGAAGC---------GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 15967 0.67 0.639661
Target:  5'- cUCCGGuucuGACggGCggUUGACUUCGcCCGUCu -3'
miRNA:   3'- -AGGCC----UUG--CGgaAGCUGAAGC-GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 16660 0.67 0.693672
Target:  5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3'
miRNA:   3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 17554 0.68 0.58547
Target:  5'- uUCCGGAACGUCgaucUCGACg--GCCaGUUc -3'
miRNA:   3'- -AGGCCUUGCGGa---AGCUGaagCGG-CAG- -5'
16348 5' -55.6 NC_004084.1 + 18131 0.7 0.501093
Target:  5'- aUCCGGAugGaCUggaaCGACgUCGCCGg- -3'
miRNA:   3'- -AGGCCUugCgGAa---GCUGaAGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.