miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 20091 0.66 0.714944
Target:  5'- aCCGGAagACGaCCgUCGAUaUCGaCGUCa -3'
miRNA:   3'- aGGCCU--UGC-GGaAGCUGaAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 20097 0.72 0.404024
Target:  5'- aUCCGGugagaucGCGCUggaagUUGACgcCGCCGUCa -3'
miRNA:   3'- -AGGCCu------UGCGGa----AGCUGaaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 21500 0.68 0.607093
Target:  5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3'
miRNA:   3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 21617 0.71 0.46091
Target:  5'- cUCGGGACGaUCUUCGACUUgGaCCGcCa -3'
miRNA:   3'- aGGCCUUGC-GGAAGCUGAAgC-GGCaG- -5'
16348 5' -55.6 NC_004084.1 + 22154 0.7 0.490896
Target:  5'- aCCGcGAGCGCC-UCGGCgcacUCGaggaCGUCg -3'
miRNA:   3'- aGGC-CUUGCGGaAGCUGa---AGCg---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 22403 0.66 0.756446
Target:  5'- aCCGGAcgaucACGCUUcUCGGCUccgacgaCGCgGUCg -3'
miRNA:   3'- aGGCCU-----UGCGGA-AGCUGAa------GCGgCAG- -5'
16348 5' -55.6 NC_004084.1 + 25714 0.66 0.735899
Target:  5'- aUCCacgcuagaGAGCGUCUUaccgucaGACUUCGCCGcCu -3'
miRNA:   3'- -AGGc-------CUUGCGGAAg------CUGAAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 26016 0.67 0.690459
Target:  5'- aUCCGGAcuguugucguaGCCUUCGagcccgaGCUcgaUCGUCGUCu -3'
miRNA:   3'- -AGGCCUug---------CGGAAGC-------UGA---AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 27006 0.69 0.55334
Target:  5'- gCCGcguCGUCUgCGACUUCGCCGa- -3'
miRNA:   3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 27251 0.67 0.672168
Target:  5'- aCCGGAAcCGCgcUCGACgagaucUCGCgGUCc -3'
miRNA:   3'- aGGCCUU-GCGgaAGCUGa-----AGCGgCAG- -5'
16348 5' -55.6 NC_004084.1 + 28071 0.66 0.756446
Target:  5'- aUCCG--ACGCCgUCGGCcaccUCGCCGa- -3'
miRNA:   3'- -AGGCcuUGCGGaAGCUGa---AGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 28107 0.69 0.574711
Target:  5'- gUUCGGGguGCGCC-UCGACga-GCgCGUCa -3'
miRNA:   3'- -AGGCCU--UGCGGaAGCUGaagCG-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 28161 0.66 0.704343
Target:  5'- gCUGGAAUaguccguccucgGCCUguUCGACgUCGCCG-Cg -3'
miRNA:   3'- aGGCCUUG------------CGGA--AGCUGaAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 28795 0.67 0.644004
Target:  5'- gUCCGGAGCcgacagccagguGCCguugUgGGCgagcaucgcgaccggUUCGCCGUCu -3'
miRNA:   3'- -AGGCCUUG------------CGGa---AgCUG---------------AAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 28939 0.66 0.756446
Target:  5'- cUCgGGAGCGCg-UCGACagCGUCGa- -3'
miRNA:   3'- -AGgCCUUGCGgaAGCUGaaGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 29280 0.69 0.55334
Target:  5'- cCCGGcAGCGCCag-GugUUCGgCGUCu -3'
miRNA:   3'- aGGCC-UUGCGGaagCugAAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 32210 0.7 0.501093
Target:  5'- --aGGAGCGCCUcgagaugcuccUCGACgaCGCCGa- -3'
miRNA:   3'- aggCCUUGCGGA-----------AGCUGaaGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 35871 0.68 0.581162
Target:  5'- aUCCGGAccgcgugaucgguCGUCUUCGGCcggaggcgaUCGUCGUCg -3'
miRNA:   3'- -AGGCCUu------------GCGGAAGCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 35944 0.66 0.735899
Target:  5'- cCCGGcguCGCCggggUCGGCg--GCCGUg -3'
miRNA:   3'- aGGCCuu-GCGGa---AGCUGaagCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 36074 0.69 0.563999
Target:  5'- gUCCGGuaguucuCGCCcUCGAgUuccUCGUCGUCu -3'
miRNA:   3'- -AGGCCuu-----GCGGaAGCUgA---AGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.