Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 36308 | 0.73 | 0.322812 |
Target: 5'- aCCGGGACGCCcUgaucgaugcccgugaCGACUUCGUCGa- -3' miRNA: 3'- aGGCCUUGCGGaA---------------GCUGAAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 36425 | 0.69 | 0.532212 |
Target: 5'- gUCCGc-GCGUCgUCGACguaCGCCGUCu -3' miRNA: 3'- -AGGCcuUGCGGaAGCUGaa-GCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 37186 | 0.69 | 0.542742 |
Target: 5'- aCCGGGAuaaacgauguCGUCacCGGCUUCGCCGcCg -3' miRNA: 3'- aGGCCUU----------GCGGaaGCUGAAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 37939 | 0.66 | 0.744172 |
Target: 5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3' miRNA: 3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 39056 | 0.7 | 0.490896 |
Target: 5'- aUCGGGACGUUgUCGAUcagcaggUCGCUGUCg -3' miRNA: 3'- aGGCCUUGCGGaAGCUGa------AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 39596 | 0.66 | 0.746229 |
Target: 5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3' miRNA: 3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 41250 | 0.71 | 0.413197 |
Target: 5'- cUCCcu--CGCCUUCGACgUCGCCGg- -3' miRNA: 3'- -AGGccuuGCGGAAGCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 42632 | 0.66 | 0.704343 |
Target: 5'- gUCC-GAACGguCCUcaagugcaUCGAgaUCGCCGUCg -3' miRNA: 3'- -AGGcCUUGC--GGA--------AGCUgaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 43718 | 0.67 | 0.693672 |
Target: 5'- cUCCaGGACGCCaUCGAUggCGaCCGg- -3' miRNA: 3'- -AGGcCUUGCGGaAGCUGaaGC-GGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 43757 | 0.72 | 0.404024 |
Target: 5'- gCCGGGACGCUcgcgggcaUCGACUgggcgcUCGCCGg- -3' miRNA: 3'- aGGCCUUGCGGa-------AGCUGA------AGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 44224 | 0.68 | 0.61794 |
Target: 5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3' miRNA: 3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46043 | 0.76 | 0.224923 |
Target: 5'- aCCGGAcccuCGCCUUCcGCUUCGUCGcCa -3' miRNA: 3'- aGGCCUu---GCGGAAGcUGAAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46555 | 0.73 | 0.332266 |
Target: 5'- gUCCGGAuCGUCgucggucgugaacUCGAUaUCGCCGUCa -3' miRNA: 3'- -AGGCCUuGCGGa------------AGCUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46729 | 0.66 | 0.756446 |
Target: 5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3' miRNA: 3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 48023 | 0.66 | 0.708592 |
Target: 5'- cUCgCGGAGuucuucgcgcucgauCGCCUgcUCGACUcUCGUCGUUc -3' miRNA: 3'- -AG-GCCUU---------------GCGGA--AGCUGA-AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 49501 | 0.78 | 0.159343 |
Target: 5'- aUCCGGAuCGUCUUCGGCUUcCGCC-UCu -3' miRNA: 3'- -AGGCCUuGCGGAAGCUGAA-GCGGcAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50747 | 0.9 | 0.025887 |
Target: 5'- --aGGAACGCCUUCuuGACUUCGCCGUCg -3' miRNA: 3'- aggCCUUGCGGAAG--CUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50773 | 0.68 | 0.611429 |
Target: 5'- gUCCGGcucuuCGUCagCGuucuucucggugccaGCUUCGCCGUCg -3' miRNA: 3'- -AGGCCuu---GCGGaaGC---------------UGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50955 | 0.66 | 0.704343 |
Target: 5'- gCCGu--CGCCgcUCGAg-UCGCCGUCg -3' miRNA: 3'- aGGCcuuGCGGa-AGCUgaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50982 | 0.66 | 0.756446 |
Target: 5'- cUCCGaGGucuCGCCaccgUCGGCaUCGCCcucGUCg -3' miRNA: 3'- -AGGC-CUu--GCGGa---AGCUGaAGCGG---CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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