miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 58184 0.7 0.502117
Target:  5'- gCCGGcugcgugcaucgcuCGCCggUCGACUUCGCUggGUCa -3'
miRNA:   3'- aGGCCuu------------GCGGa-AGCUGAAGCGG--CAG- -5'
16348 5' -55.6 NC_004084.1 + 58059 0.73 0.35178
Target:  5'- cCCGGuagGCGCCguguUCGACggCGuuGUCg -3'
miRNA:   3'- aGGCCu--UGCGGa---AGCUGaaGCggCAG- -5'
16348 5' -55.6 NC_004084.1 + 57960 0.67 0.661355
Target:  5'- aCCGGGcaACGuCCUgggCGucCUcCGCCGUCu -3'
miRNA:   3'- aGGCCU--UGC-GGAa--GCu-GAaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 57121 0.69 0.542742
Target:  5'- gUCGaGGACGUCcUCGGugUCGCCGUCu -3'
miRNA:   3'- aGGC-CUUGCGGaAGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 56923 0.68 0.628799
Target:  5'- gUCGGGACGgcggaCUUCGuagUCGUCGUCg -3'
miRNA:   3'- aGGCCUUGCg----GAAGCugaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 55913 0.66 0.746229
Target:  5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3'
miRNA:   3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 55840 0.66 0.725467
Target:  5'- gUCCGGGAUGCCgucaaCGACg-CGgaCGUCu -3'
miRNA:   3'- -AGGCCUUGCGGaa---GCUGaaGCg-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 55336 0.75 0.24929
Target:  5'- gCCGGAACGCacgUCGACgagCGgcCCGUCg -3'
miRNA:   3'- aGGCCUUGCGga-AGCUGaa-GC--GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 54228 0.66 0.714944
Target:  5'- gUCGGAucucgACGUCggagCGAUcagCGCCGUCg -3'
miRNA:   3'- aGGCCU-----UGCGGaa--GCUGaa-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 53150 0.66 0.756446
Target:  5'- -gCGGGACGUCgUCGACgagGCCGa- -3'
miRNA:   3'- agGCCUUGCGGaAGCUGaagCGGCag -5'
16348 5' -55.6 NC_004084.1 + 51657 0.69 0.563999
Target:  5'- cUCGGAcUGcCCUUCcgcggGACUUaCGCCGUCa -3'
miRNA:   3'- aGGCCUuGC-GGAAG-----CUGAA-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 51522 0.67 0.672168
Target:  5'- gUCCGacucGAGCGCCauUUCGAUcgCGUCGUg -3'
miRNA:   3'- -AGGC----CUUGCGG--AAGCUGaaGCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 51090 0.74 0.289875
Target:  5'- cUCUGGGGCGUCUUCcaucGCUUUGuCCGUCu -3'
miRNA:   3'- -AGGCCUUGCGGAAGc---UGAAGC-GGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50982 0.66 0.756446
Target:  5'- cUCCGaGGucuCGCCaccgUCGGCaUCGCCcucGUCg -3'
miRNA:   3'- -AGGC-CUu--GCGGa---AGCUGaAGCGG---CAG- -5'
16348 5' -55.6 NC_004084.1 + 50955 0.66 0.704343
Target:  5'- gCCGu--CGCCgcUCGAg-UCGCCGUCg -3'
miRNA:   3'- aGGCcuuGCGGa-AGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50773 0.68 0.611429
Target:  5'- gUCCGGcucuuCGUCagCGuucuucucggugccaGCUUCGCCGUCg -3'
miRNA:   3'- -AGGCCuu---GCGGaaGC---------------UGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50747 0.9 0.025887
Target:  5'- --aGGAACGCCUUCuuGACUUCGCCGUCg -3'
miRNA:   3'- aggCCUUGCGGAAG--CUGAAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 49501 0.78 0.159343
Target:  5'- aUCCGGAuCGUCUUCGGCUUcCGCC-UCu -3'
miRNA:   3'- -AGGCCUuGCGGAAGCUGAA-GCGGcAG- -5'
16348 5' -55.6 NC_004084.1 + 48023 0.66 0.708592
Target:  5'- cUCgCGGAGuucuucgcgcucgauCGCCUgcUCGACUcUCGUCGUUc -3'
miRNA:   3'- -AG-GCCUU---------------GCGGA--AGCUGA-AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 46729 0.66 0.756446
Target:  5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3'
miRNA:   3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.