miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 46555 0.73 0.332266
Target:  5'- gUCCGGAuCGUCgucggucgugaacUCGAUaUCGCCGUCa -3'
miRNA:   3'- -AGGCCUuGCGGa------------AGCUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 46043 0.76 0.224923
Target:  5'- aCCGGAcccuCGCCUUCcGCUUCGUCGcCa -3'
miRNA:   3'- aGGCCUu---GCGGAAGcUGAAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 44224 0.68 0.61794
Target:  5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3'
miRNA:   3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 43757 0.72 0.404024
Target:  5'- gCCGGGACGCUcgcgggcaUCGACUgggcgcUCGCCGg- -3'
miRNA:   3'- aGGCCUUGCGGa-------AGCUGA------AGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 43718 0.67 0.693672
Target:  5'- cUCCaGGACGCCaUCGAUggCGaCCGg- -3'
miRNA:   3'- -AGGcCUUGCGGaAGCUGaaGC-GGCag -5'
16348 5' -55.6 NC_004084.1 + 42632 0.66 0.704343
Target:  5'- gUCC-GAACGguCCUcaagugcaUCGAgaUCGCCGUCg -3'
miRNA:   3'- -AGGcCUUGC--GGA--------AGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 41250 0.71 0.413197
Target:  5'- cUCCcu--CGCCUUCGACgUCGCCGg- -3'
miRNA:   3'- -AGGccuuGCGGAAGCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 39596 0.66 0.746229
Target:  5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3'
miRNA:   3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 39056 0.7 0.490896
Target:  5'- aUCGGGACGUUgUCGAUcagcaggUCGCUGUCg -3'
miRNA:   3'- aGGCCUUGCGGaAGCUGa------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 37939 0.66 0.744172
Target:  5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3'
miRNA:   3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5'
16348 5' -55.6 NC_004084.1 + 37186 0.69 0.542742
Target:  5'- aCCGGGAuaaacgauguCGUCacCGGCUUCGCCGcCg -3'
miRNA:   3'- aGGCCUU----------GCGGaaGCUGAAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 36425 0.69 0.532212
Target:  5'- gUCCGc-GCGUCgUCGACguaCGCCGUCu -3'
miRNA:   3'- -AGGCcuUGCGGaAGCUGaa-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 36308 0.73 0.322812
Target:  5'- aCCGGGACGCCcUgaucgaugcccgugaCGACUUCGUCGa- -3'
miRNA:   3'- aGGCCUUGCGGaA---------------GCUGAAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 36074 0.69 0.563999
Target:  5'- gUCCGGuaguucuCGCCcUCGAgUuccUCGUCGUCu -3'
miRNA:   3'- -AGGCCuu-----GCGGaAGCUgA---AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 35944 0.66 0.735899
Target:  5'- cCCGGcguCGCCggggUCGGCg--GCCGUg -3'
miRNA:   3'- aGGCCuu-GCGGa---AGCUGaagCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 35871 0.68 0.581162
Target:  5'- aUCCGGAccgcgugaucgguCGUCUUCGGCcggaggcgaUCGUCGUCg -3'
miRNA:   3'- -AGGCCUu------------GCGGAAGCUGa--------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 32210 0.7 0.501093
Target:  5'- --aGGAGCGCCUcgagaugcuccUCGACgaCGCCGa- -3'
miRNA:   3'- aggCCUUGCGGA-----------AGCUGaaGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 29280 0.69 0.55334
Target:  5'- cCCGGcAGCGCCag-GugUUCGgCGUCu -3'
miRNA:   3'- aGGCC-UUGCGGaagCugAAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 28939 0.66 0.756446
Target:  5'- cUCgGGAGCGCg-UCGACagCGUCGa- -3'
miRNA:   3'- -AGgCCUUGCGgaAGCUGaaGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 28795 0.67 0.644004
Target:  5'- gUCCGGAGCcgacagccagguGCCguugUgGGCgagcaucgcgaccggUUCGCCGUCu -3'
miRNA:   3'- -AGGCCUUG------------CGGa---AgCUG---------------AAGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.