Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 28161 | 0.66 | 0.704343 |
Target: 5'- gCUGGAAUaguccguccucgGCCUguUCGACgUCGCCG-Cg -3' miRNA: 3'- aGGCCUUG------------CGGA--AGCUGaAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28107 | 0.69 | 0.574711 |
Target: 5'- gUUCGGGguGCGCC-UCGACga-GCgCGUCa -3' miRNA: 3'- -AGGCCU--UGCGGaAGCUGaagCG-GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28071 | 0.66 | 0.756446 |
Target: 5'- aUCCG--ACGCCgUCGGCcaccUCGCCGa- -3' miRNA: 3'- -AGGCcuUGCGGaAGCUGa---AGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 27251 | 0.67 | 0.672168 |
Target: 5'- aCCGGAAcCGCgcUCGACgagaucUCGCgGUCc -3' miRNA: 3'- aGGCCUU-GCGgaAGCUGa-----AGCGgCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 27006 | 0.69 | 0.55334 |
Target: 5'- gCCGcguCGUCUgCGACUUCGCCGa- -3' miRNA: 3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 26016 | 0.67 | 0.690459 |
Target: 5'- aUCCGGAcuguugucguaGCCUUCGagcccgaGCUcgaUCGUCGUCu -3' miRNA: 3'- -AGGCCUug---------CGGAAGC-------UGA---AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 25714 | 0.66 | 0.735899 |
Target: 5'- aUCCacgcuagaGAGCGUCUUaccgucaGACUUCGCCGcCu -3' miRNA: 3'- -AGGc-------CUUGCGGAAg------CUGAAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 22403 | 0.66 | 0.756446 |
Target: 5'- aCCGGAcgaucACGCUUcUCGGCUccgacgaCGCgGUCg -3' miRNA: 3'- aGGCCU-----UGCGGA-AGCUGAa------GCGgCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 22154 | 0.7 | 0.490896 |
Target: 5'- aCCGcGAGCGCC-UCGGCgcacUCGaggaCGUCg -3' miRNA: 3'- aGGC-CUUGCGGaAGCUGa---AGCg---GCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 21617 | 0.71 | 0.46091 |
Target: 5'- cUCGGGACGaUCUUCGACUUgGaCCGcCa -3' miRNA: 3'- aGGCCUUGC-GGAAGCUGAAgC-GGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 21500 | 0.68 | 0.607093 |
Target: 5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3' miRNA: 3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 20097 | 0.72 | 0.404024 |
Target: 5'- aUCCGGugagaucGCGCUggaagUUGACgcCGCCGUCa -3' miRNA: 3'- -AGGCCu------UGCGGa----AGCUGaaGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 20091 | 0.66 | 0.714944 |
Target: 5'- aCCGGAagACGaCCgUCGAUaUCGaCGUCa -3' miRNA: 3'- aGGCCU--UGC-GGaAGCUGaAGCgGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 18131 | 0.7 | 0.501093 |
Target: 5'- aUCCGGAugGaCUggaaCGACgUCGCCGg- -3' miRNA: 3'- -AGGCCUugCgGAa---GCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 17554 | 0.68 | 0.58547 |
Target: 5'- uUCCGGAACGUCgaucUCGACg--GCCaGUUc -3' miRNA: 3'- -AGGCCUUGCGGa---AGCUGaagCGG-CAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 16660 | 0.67 | 0.693672 |
Target: 5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3' miRNA: 3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 15967 | 0.67 | 0.639661 |
Target: 5'- cUCCGGuucuGACggGCggUUGACUUCGcCCGUCu -3' miRNA: 3'- -AGGCC----UUG--CGgaAGCUGAAGC-GGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 11880 | 0.66 | 0.735899 |
Target: 5'- aUCCGG-ACGUCgaaGACUUCGaugccgagaUCGUCa -3' miRNA: 3'- -AGGCCuUGCGGaagCUGAAGC---------GGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 10989 | 0.81 | 0.107554 |
Target: 5'- aUCGGAucgucuugucgccgACGuCCUUCGGCUUCGUCGUCg -3' miRNA: 3'- aGGCCU--------------UGC-GGAAGCUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 10519 | 0.7 | 0.501093 |
Target: 5'- cUCgCGGAGCGaCCgUCGACgUUGCCGa- -3' miRNA: 3'- -AG-GCCUUGC-GGaAGCUGaAGCGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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