miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16348 5' -55.6 NC_004084.1 + 29280 0.69 0.55334
Target:  5'- cCCGGcAGCGCCag-GugUUCGgCGUCu -3'
miRNA:   3'- aGGCC-UUGCGGaagCugAAGCgGCAG- -5'
16348 5' -55.6 NC_004084.1 + 28107 0.69 0.574711
Target:  5'- gUUCGGGguGCGCC-UCGACga-GCgCGUCa -3'
miRNA:   3'- -AGGCCU--UGCGGaAGCUGaagCG-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 21500 0.68 0.607093
Target:  5'- aUCUGGAACGCgauucUCGAaacgUUCGCCGcCg -3'
miRNA:   3'- -AGGCCUUGCGga---AGCUg---AAGCGGCaG- -5'
16348 5' -55.6 NC_004084.1 + 44224 0.68 0.61794
Target:  5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3'
miRNA:   3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 48023 0.66 0.708592
Target:  5'- cUCgCGGAGuucuucgcgcucgauCGCCUgcUCGACUcUCGUCGUUc -3'
miRNA:   3'- -AG-GCCUU---------------GCGGA--AGCUGA-AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 50955 0.66 0.704343
Target:  5'- gCCGu--CGCCgcUCGAg-UCGCCGUCg -3'
miRNA:   3'- aGGCcuuGCGGa-AGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 42632 0.66 0.704343
Target:  5'- gUCC-GAACGguCCUcaagugcaUCGAgaUCGCCGUCg -3'
miRNA:   3'- -AGGcCUUGC--GGA--------AGCUgaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 43718 0.67 0.693672
Target:  5'- cUCCaGGACGCCaUCGAUggCGaCCGg- -3'
miRNA:   3'- -AGGcCUUGCGGaAGCUGaaGC-GGCag -5'
16348 5' -55.6 NC_004084.1 + 16660 0.67 0.693672
Target:  5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3'
miRNA:   3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 51522 0.67 0.672168
Target:  5'- gUCCGacucGAGCGCCauUUCGAUcgCGUCGUg -3'
miRNA:   3'- -AGGC----CUUGCGG--AAGCUGaaGCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 9449 0.67 0.672168
Target:  5'- -gCGGGACGCCguagUCGGCggcaUCGUguuUGUCc -3'
miRNA:   3'- agGCCUUGCGGa---AGCUGa---AGCG---GCAG- -5'
16348 5' -55.6 NC_004084.1 + 54228 0.66 0.714944
Target:  5'- gUCGGAucucgACGUCggagCGAUcagCGCCGUCg -3'
miRNA:   3'- aGGCCU-----UGCGGaa--GCUGaa-GCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 55840 0.66 0.725467
Target:  5'- gUCCGGGAUGCCgucaaCGACg-CGgaCGUCu -3'
miRNA:   3'- -AGGCCUUGCGGaa---GCUGaaGCg-GCAG- -5'
16348 5' -55.6 NC_004084.1 + 10375 0.66 0.725467
Target:  5'- gUCCGG-AUGagUUCGACgucgagcUCGUCGUCg -3'
miRNA:   3'- -AGGCCuUGCggAAGCUGa------AGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 35944 0.66 0.735899
Target:  5'- cCCGGcguCGCCggggUCGGCg--GCCGUg -3'
miRNA:   3'- aGGCCuu-GCGGa---AGCUGaagCGGCAg -5'
16348 5' -55.6 NC_004084.1 + 37939 0.66 0.744172
Target:  5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3'
miRNA:   3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5'
16348 5' -55.6 NC_004084.1 + 55913 0.66 0.746229
Target:  5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3'
miRNA:   3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 39596 0.66 0.746229
Target:  5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3'
miRNA:   3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5'
16348 5' -55.6 NC_004084.1 + 46729 0.66 0.756446
Target:  5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3'
miRNA:   3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5'
16348 5' -55.6 NC_004084.1 + 9135 1.11 0.000828
Target:  5'- aUCCGGAACGCCUUCGACUUCGCCGUCg -3'
miRNA:   3'- -AGGCCUUGCGGAAGCUGAAGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.