Results 41 - 60 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 1035 | 0.71 | 0.413197 |
Target: 5'- aUCgGGGGCGCgcUCGAgUUCGCCGa- -3' miRNA: 3'- -AGgCCUUGCGgaAGCUgAAGCGGCag -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 861 | 0.68 | 0.628799 |
Target: 5'- -gUGGAAagaGUCagucgUCGACgUCGCCGUCg -3' miRNA: 3'- agGCCUUg--CGGa----AGCUGaAGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 15967 | 0.67 | 0.639661 |
Target: 5'- cUCCGGuucuGACggGCggUUGACUUCGcCCGUCu -3' miRNA: 3'- -AGGCC----UUG--CGgaAGCUGAAGC-GGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 57960 | 0.67 | 0.661355 |
Target: 5'- aCCGGGcaACGuCCUgggCGucCUcCGCCGUCu -3' miRNA: 3'- aGGCCU--UGC-GGAa--GCu-GAaGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 46729 | 0.66 | 0.756446 |
Target: 5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3' miRNA: 3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 39596 | 0.66 | 0.746229 |
Target: 5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3' miRNA: 3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 55913 | 0.66 | 0.746229 |
Target: 5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3' miRNA: 3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 37939 | 0.66 | 0.744172 |
Target: 5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3' miRNA: 3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 35944 | 0.66 | 0.735899 |
Target: 5'- cCCGGcguCGCCggggUCGGCg--GCCGUg -3' miRNA: 3'- aGGCCuu-GCGGa---AGCUGaagCGGCAg -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 10375 | 0.66 | 0.725467 |
Target: 5'- gUCCGG-AUGagUUCGACgucgagcUCGUCGUCg -3' miRNA: 3'- -AGGCCuUGCggAAGCUGa------AGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 55840 | 0.66 | 0.725467 |
Target: 5'- gUCCGGGAUGCCgucaaCGACg-CGgaCGUCu -3' miRNA: 3'- -AGGCCUUGCGGaa---GCUGaaGCg-GCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 54228 | 0.66 | 0.714944 |
Target: 5'- gUCGGAucucgACGUCggagCGAUcagCGCCGUCg -3' miRNA: 3'- aGGCCU-----UGCGGaa--GCUGaa-GCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 48023 | 0.66 | 0.708592 |
Target: 5'- cUCgCGGAGuucuucgcgcucgauCGCCUgcUCGACUcUCGUCGUUc -3' miRNA: 3'- -AG-GCCUU---------------GCGGA--AGCUGA-AGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 50955 | 0.66 | 0.704343 |
Target: 5'- gCCGu--CGCCgcUCGAg-UCGCCGUCg -3' miRNA: 3'- aGGCcuuGCGGa-AGCUgaAGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 42632 | 0.66 | 0.704343 |
Target: 5'- gUCC-GAACGguCCUcaagugcaUCGAgaUCGCCGUCg -3' miRNA: 3'- -AGGcCUUGC--GGA--------AGCUgaAGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 43718 | 0.67 | 0.693672 |
Target: 5'- cUCCaGGACGCCaUCGAUggCGaCCGg- -3' miRNA: 3'- -AGGcCUUGCGGaAGCUGaaGC-GGCag -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 16660 | 0.67 | 0.693672 |
Target: 5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3' miRNA: 3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 51522 | 0.67 | 0.672168 |
Target: 5'- gUCCGacucGAGCGCCauUUCGAUcgCGUCGUg -3' miRNA: 3'- -AGGC----CUUGCGG--AAGCUGaaGCGGCAg -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 9449 | 0.67 | 0.672168 |
Target: 5'- -gCGGGACGCCguagUCGGCggcaUCGUguuUGUCc -3' miRNA: 3'- agGCCUUGCGGa---AGCUGa---AGCG---GCAG- -5' |
|||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 5147 | 0.67 | 0.672168 |
Target: 5'- gCCaGGACGUCgccCGGCccgaucucgUCGCCGUCg -3' miRNA: 3'- aGGcCUUGCGGaa-GCUGa--------AGCGGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home