Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16348 | 5' | -55.6 | NC_004084.1 | + | 49501 | 0.78 | 0.159343 |
Target: 5'- aUCCGGAuCGUCUUCGGCUUcCGCC-UCu -3' miRNA: 3'- -AGGCCUuGCGGAAGCUGAA-GCGGcAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 9135 | 1.11 | 0.000828 |
Target: 5'- aUCCGGAACGCCUUCGACUUCGCCGUCg -3' miRNA: 3'- -AGGCCUUGCGGAAGCUGAAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 41250 | 0.71 | 0.413197 |
Target: 5'- cUCCcu--CGCCUUCGACgUCGCCGg- -3' miRNA: 3'- -AGGccuuGCGGAAGCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 37939 | 0.66 | 0.744172 |
Target: 5'- -gCGGGAuCGUCgcguuugaagaCGACUUCGCCGgUCg -3' miRNA: 3'- agGCCUU-GCGGaa---------GCUGAAGCGGC-AG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 55913 | 0.66 | 0.746229 |
Target: 5'- gCCGGAggaguGgGCCgacUgGACUUCaGUCGUCa -3' miRNA: 3'- aGGCCU-----UgCGGa--AgCUGAAG-CGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 39596 | 0.66 | 0.746229 |
Target: 5'- cCCGGGcGCGCUUgucUGGCgUCGCCGa- -3' miRNA: 3'- aGGCCU-UGCGGAa--GCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 46729 | 0.66 | 0.756446 |
Target: 5'- uUCCG--ACGCCguguaGACgUCGCUGUCc -3' miRNA: 3'- -AGGCcuUGCGGaag--CUGaAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 50982 | 0.66 | 0.756446 |
Target: 5'- cUCCGaGGucuCGCCaccgUCGGCaUCGCCcucGUCg -3' miRNA: 3'- -AGGC-CUu--GCGGa---AGCUGaAGCGG---CAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 16660 | 0.67 | 0.693672 |
Target: 5'- gUCCGGGAgGuCCUcgUCGcCggCGUCGUCc -3' miRNA: 3'- -AGGCCUUgC-GGA--AGCuGaaGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28795 | 0.67 | 0.644004 |
Target: 5'- gUCCGGAGCcgacagccagguGCCguugUgGGCgagcaucgcgaccggUUCGCCGUCu -3' miRNA: 3'- -AGGCCUUG------------CGGa---AgCUG---------------AAGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 53150 | 0.66 | 0.756446 |
Target: 5'- -gCGGGACGUCgUCGACgagGCCGa- -3' miRNA: 3'- agGCCUUGCGGaAGCUGaagCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 21617 | 0.71 | 0.46091 |
Target: 5'- cUCGGGACGaUCUUCGACUUgGaCCGcCa -3' miRNA: 3'- aGGCCUUGC-GGAAGCUGAAgC-GGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 1985 | 0.66 | 0.756446 |
Target: 5'- -aCGGGAUGCa---GACUaCGUCGUCg -3' miRNA: 3'- agGCCUUGCGgaagCUGAaGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28071 | 0.66 | 0.756446 |
Target: 5'- aUCCG--ACGCCgUCGGCcaccUCGCCGa- -3' miRNA: 3'- -AGGCcuUGCGGaAGCUGa---AGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 18131 | 0.7 | 0.501093 |
Target: 5'- aUCCGGAugGaCUggaaCGACgUCGCCGg- -3' miRNA: 3'- -AGGCCUugCgGAa---GCUGaAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 27006 | 0.69 | 0.55334 |
Target: 5'- gCCGcguCGUCUgCGACUUCGCCGa- -3' miRNA: 3'- aGGCcuuGCGGAaGCUGAAGCGGCag -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 28161 | 0.66 | 0.704343 |
Target: 5'- gCUGGAAUaguccguccucgGCCUguUCGACgUCGCCG-Cg -3' miRNA: 3'- aGGCCUUG------------CGGA--AGCUGaAGCGGCaG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 26016 | 0.67 | 0.690459 |
Target: 5'- aUCCGGAcuguugucguaGCCUUCGagcccgaGCUcgaUCGUCGUCu -3' miRNA: 3'- -AGGCCUug---------CGGAAGC-------UGA---AGCGGCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 27251 | 0.67 | 0.672168 |
Target: 5'- aCCGGAAcCGCgcUCGACgagaucUCGCgGUCc -3' miRNA: 3'- aGGCCUU-GCGgaAGCUGa-----AGCGgCAG- -5' |
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16348 | 5' | -55.6 | NC_004084.1 | + | 44224 | 0.68 | 0.61794 |
Target: 5'- -gCGGAugGCCgaCGGCUgggaGCuCGUCu -3' miRNA: 3'- agGCCUugCGGaaGCUGAag--CG-GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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