miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1635 3' -55.9 NC_001347.2 + 199692 0.66 0.954729
Target:  5'- ---uUGGGUgucGCCGGcgagccccgaggcGCGCCcGCUGCGa -3'
miRNA:   3'- uuauAUCCA---CGGCC-------------UGCGGcCGAUGC- -5'
1635 3' -55.9 NC_001347.2 + 159284 0.66 0.951197
Target:  5'- -----uGGUGCUGGcgGCGCCgGGCgccACGg -3'
miRNA:   3'- uuauauCCACGGCC--UGCGG-CCGa--UGC- -5'
1635 3' -55.9 NC_001347.2 + 143667 0.66 0.947062
Target:  5'- -----uGGcGCCGGAgGCCGGCcuggaggucUGCGc -3'
miRNA:   3'- uuauauCCaCGGCCUgCGGCCG---------AUGC- -5'
1635 3' -55.9 NC_001347.2 + 140568 0.66 0.947062
Target:  5'- ----gGGGUuCCGGGCGgCGGUgcugGCGg -3'
miRNA:   3'- uuauaUCCAcGGCCUGCgGCCGa---UGC- -5'
1635 3' -55.9 NC_001347.2 + 65969 0.66 0.942702
Target:  5'- ----cGGGuUGCCuGGACGCCugGGCgcgACGc -3'
miRNA:   3'- uuauaUCC-ACGG-CCUGCGG--CCGa--UGC- -5'
1635 3' -55.9 NC_001347.2 + 101242 0.67 0.9333
Target:  5'- cGUGcAGGUGCCGcguguggccagcGGCGCCGGUUuGCc -3'
miRNA:   3'- uUAUaUCCACGGC------------CUGCGGCCGA-UGc -5'
1635 3' -55.9 NC_001347.2 + 148617 0.67 0.911739
Target:  5'- --gGUGcGGUcGCgGGugGCCGGCgucaGCGu -3'
miRNA:   3'- uuaUAU-CCA-CGgCCugCGGCCGa---UGC- -5'
1635 3' -55.9 NC_001347.2 + 63061 0.68 0.899587
Target:  5'- --cAUGGGUGgCGGAggacUGCCGGCg--- -3'
miRNA:   3'- uuaUAUCCACgGCCU----GCGGCCGaugc -5'
1635 3' -55.9 NC_001347.2 + 100210 0.68 0.886543
Target:  5'- ----cAGGUaGCCGGAgaCGgCGGUUACGu -3'
miRNA:   3'- uuauaUCCA-CGGCCU--GCgGCCGAUGC- -5'
1635 3' -55.9 NC_001347.2 + 229056 0.68 0.878998
Target:  5'- uGGUGUGGGUGCUGuuugugucuGugGCUGGCaugauugUGCGg -3'
miRNA:   3'- -UUAUAUCCACGGC---------CugCGGCCG-------AUGC- -5'
1635 3' -55.9 NC_001347.2 + 187515 0.69 0.865366
Target:  5'- aGAUGUcGGUGCgCGaGACGCUGGUcACa -3'
miRNA:   3'- -UUAUAuCCACG-GC-CUGCGGCCGaUGc -5'
1635 3' -55.9 NC_001347.2 + 115514 0.71 0.764262
Target:  5'- -----cGGUGCCGGccGCGCUagcgGGCUGCa -3'
miRNA:   3'- uuauauCCACGGCC--UGCGG----CCGAUGc -5'
1635 3' -55.9 NC_001347.2 + 67002 0.72 0.685997
Target:  5'- -----cGGcUGCUGGggggccaACGCCGGCUGCGg -3'
miRNA:   3'- uuauauCC-ACGGCC-------UGCGGCCGAUGC- -5'
1635 3' -55.9 NC_001347.2 + 96815 0.73 0.616904
Target:  5'- ----cAGGUGCCGGcgacugACGCCGGCaucgGCa -3'
miRNA:   3'- uuauaUCCACGGCC------UGCGGCCGa---UGc -5'
1635 3' -55.9 NC_001347.2 + 182202 0.79 0.330029
Target:  5'- ----gGGGUGCgGGugGCgGGCUGCGu -3'
miRNA:   3'- uuauaUCCACGgCCugCGgCCGAUGC- -5'
1635 3' -55.9 NC_001347.2 + 133463 1.06 0.006648
Target:  5'- aAAUAUAGGUGCCGGACGCCGGCUACGu -3'
miRNA:   3'- -UUAUAUCCACGGCCUGCGGCCGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.