miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1635 5' -51.4 NC_001347.2 + 196378 0.66 0.996444
Target:  5'- cGUUUGGAGCACgCCGAGCugagGCuGGa-- -3'
miRNA:   3'- cCGAAUCUCGUG-GGUUUG----CGuCCaaa -5'
1635 5' -51.4 NC_001347.2 + 15546 0.66 0.995144
Target:  5'- cGGUgUGGaAGCAgCCGAGCGCgAGGc-- -3'
miRNA:   3'- -CCGaAUC-UCGUgGGUUUGCG-UCCaaa -5'
1635 5' -51.4 NC_001347.2 + 200420 0.67 0.99239
Target:  5'- aGGCUUGGAGuCACuaccuguguugCCAGACGCgccuggccuucguGGGUc- -3'
miRNA:   3'- -CCGAAUCUC-GUG-----------GGUUUGCG-------------UCCAaa -5'
1635 5' -51.4 NC_001347.2 + 225445 0.67 0.987305
Target:  5'- cGGC--AGAGCuACCauauaaAAACGCAGGg-- -3'
miRNA:   3'- -CCGaaUCUCG-UGGg-----UUUGCGUCCaaa -5'
1635 5' -51.4 NC_001347.2 + 170373 0.68 0.977363
Target:  5'- cGGCgcgGGAGCugCCGucCGaCAGGa-- -3'
miRNA:   3'- -CCGaa-UCUCGugGGUuuGC-GUCCaaa -5'
1635 5' -51.4 NC_001347.2 + 159567 0.69 0.974829
Target:  5'- cGGCggugUUGGAGCgGCgCCAGACGCAGcGa-- -3'
miRNA:   3'- -CCG----AAUCUCG-UG-GGUUUGCGUC-Caaa -5'
1635 5' -51.4 NC_001347.2 + 116917 0.69 0.974829
Target:  5'- cGGCUac-GGCAUCCGAACccaGCAGGUc- -3'
miRNA:   3'- -CCGAaucUCGUGGGUUUG---CGUCCAaa -5'
1635 5' -51.4 NC_001347.2 + 37918 0.69 0.974829
Target:  5'- cGGCUc--GGCGCCCAcagcgcggcGCGCGGGUg- -3'
miRNA:   3'- -CCGAaucUCGUGGGUu--------UGCGUCCAaa -5'
1635 5' -51.4 NC_001347.2 + 208743 0.71 0.927061
Target:  5'- aGGCUguGGGUcucguuGCCCAGcACGCAGGUg- -3'
miRNA:   3'- -CCGAauCUCG------UGGGUU-UGCGUCCAaa -5'
1635 5' -51.4 NC_001347.2 + 138192 0.72 0.883031
Target:  5'- aGGUUU--GGCGCCCGuaggcGCGCGGGUUUu -3'
miRNA:   3'- -CCGAAucUCGUGGGUu----UGCGUCCAAA- -5'
1635 5' -51.4 NC_001347.2 + 133500 1.07 0.012803
Target:  5'- gGGCUUAGAGCACCCAAACGCAGGUUUc -3'
miRNA:   3'- -CCGAAUCUCGUGGGUUUGCGUCCAAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.