Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1635 | 5' | -51.4 | NC_001347.2 | + | 15546 | 0.66 | 0.995144 |
Target: 5'- cGGUgUGGaAGCAgCCGAGCGCgAGGc-- -3' miRNA: 3'- -CCGaAUC-UCGUgGGUUUGCG-UCCaaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 37918 | 0.69 | 0.974829 |
Target: 5'- cGGCUc--GGCGCCCAcagcgcggcGCGCGGGUg- -3' miRNA: 3'- -CCGAaucUCGUGGGUu--------UGCGUCCAaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 116917 | 0.69 | 0.974829 |
Target: 5'- cGGCUac-GGCAUCCGAACccaGCAGGUc- -3' miRNA: 3'- -CCGAaucUCGUGGGUUUG---CGUCCAaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 133500 | 1.07 | 0.012803 |
Target: 5'- gGGCUUAGAGCACCCAAACGCAGGUUUc -3' miRNA: 3'- -CCGAAUCUCGUGGGUUUGCGUCCAAA- -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 138192 | 0.72 | 0.883031 |
Target: 5'- aGGUUU--GGCGCCCGuaggcGCGCGGGUUUu -3' miRNA: 3'- -CCGAAucUCGUGGGUu----UGCGUCCAAA- -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 159567 | 0.69 | 0.974829 |
Target: 5'- cGGCggugUUGGAGCgGCgCCAGACGCAGcGa-- -3' miRNA: 3'- -CCG----AAUCUCG-UG-GGUUUGCGUC-Caaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 170373 | 0.68 | 0.977363 |
Target: 5'- cGGCgcgGGAGCugCCGucCGaCAGGa-- -3' miRNA: 3'- -CCGaa-UCUCGugGGUuuGC-GUCCaaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 196378 | 0.66 | 0.996444 |
Target: 5'- cGUUUGGAGCACgCCGAGCugagGCuGGa-- -3' miRNA: 3'- cCGAAUCUCGUG-GGUUUG----CGuCCaaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 200420 | 0.67 | 0.99239 |
Target: 5'- aGGCUUGGAGuCACuaccuguguugCCAGACGCgccuggccuucguGGGUc- -3' miRNA: 3'- -CCGAAUCUC-GUG-----------GGUUUGCG-------------UCCAaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 208743 | 0.71 | 0.927061 |
Target: 5'- aGGCUguGGGUcucguuGCCCAGcACGCAGGUg- -3' miRNA: 3'- -CCGAauCUCG------UGGGUU-UGCGUCCAaa -5' |
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1635 | 5' | -51.4 | NC_001347.2 | + | 225445 | 0.67 | 0.987305 |
Target: 5'- cGGC--AGAGCuACCauauaaAAACGCAGGg-- -3' miRNA: 3'- -CCGaaUCUCG-UGGg-----UUUGCGUCCaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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