miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16351 5' -61.8 NC_004084.1 + 52144 0.66 0.419403
Target:  5'- uUCUGcGUCGUgaucauggacGCCGACCAcGUcgacgaaCCGCUCg -3'
miRNA:   3'- cGGAC-CAGCA----------CGGCUGGU-CG-------GGCGAG- -5'
16351 5' -61.8 NC_004084.1 + 12906 0.66 0.402465
Target:  5'- uCCUcGGagUG-GCCGACCGGCCCGg-- -3'
miRNA:   3'- cGGA-CCa-GCaCGGCUGGUCGGGCgag -5'
16351 5' -61.8 NC_004084.1 + 23273 0.66 0.393726
Target:  5'- gGUCUGGagaccgagCG-GCCGACCAGuCCCGa-- -3'
miRNA:   3'- -CGGACCa-------GCaCGGCUGGUC-GGGCgag -5'
16351 5' -61.8 NC_004084.1 + 53296 0.66 0.367431
Target:  5'- cGCCgaGGUUGUaucgacgGUCGGCCAGCUgGCg- -3'
miRNA:   3'- -CGGa-CCAGCA-------CGGCUGGUCGGgCGag -5'
16351 5' -61.8 NC_004084.1 + 5157 0.67 0.35921
Target:  5'- cGCCcGGcccgaucUCGUcGCCgucgacGACC-GCCCGCUCg -3'
miRNA:   3'- -CGGaCC-------AGCA-CGG------CUGGuCGGGCGAG- -5'
16351 5' -61.8 NC_004084.1 + 19684 0.67 0.351922
Target:  5'- cCCUGGUCGUucugGCCGACCAaGUcaCCuuUCg -3'
miRNA:   3'- cGGACCAGCA----CGGCUGGU-CG--GGcgAG- -5'
16351 5' -61.8 NC_004084.1 + 2304 0.67 0.323828
Target:  5'- gGUCUGGUCGUGCUcGCCGGagaucuuguugagcuCCUGC-Cg -3'
miRNA:   3'- -CGGACCAGCACGGcUGGUC---------------GGGCGaG- -5'
16351 5' -61.8 NC_004084.1 + 39608 0.68 0.306046
Target:  5'- uGUCUGG-CGUcGCCGACCAcacGCCCuggauGUUCc -3'
miRNA:   3'- -CGGACCaGCA-CGGCUGGU---CGGG-----CGAG- -5'
16351 5' -61.8 NC_004084.1 + 14013 0.68 0.298861
Target:  5'- -aCgGGU--UGCCGAgCCAGCCgCGCUCg -3'
miRNA:   3'- cgGaCCAgcACGGCU-GGUCGG-GCGAG- -5'
16351 5' -61.8 NC_004084.1 + 56129 0.68 0.291807
Target:  5'- cGCCgcaGuGUCGUcggcGUCGACCAGCCCcauCUCc -3'
miRNA:   3'- -CGGa--C-CAGCA----CGGCUGGUCGGGc--GAG- -5'
16351 5' -61.8 NC_004084.1 + 56489 0.69 0.258488
Target:  5'- gGCCcGGUCGUaCuCGACCAGCUgGgUCu -3'
miRNA:   3'- -CGGaCCAGCAcG-GCUGGUCGGgCgAG- -5'
16351 5' -61.8 NC_004084.1 + 7593 0.69 0.246056
Target:  5'- gGCa-GGUUGUGCCGGC--GCCCGCg- -3'
miRNA:   3'- -CGgaCCAGCACGGCUGguCGGGCGag -5'
16351 5' -61.8 NC_004084.1 + 25373 0.71 0.201225
Target:  5'- gGCCuUGGUCGgGCuUGACCcaGGUCCGCUUc -3'
miRNA:   3'- -CGG-ACCAGCaCG-GCUGG--UCGGGCGAG- -5'
16351 5' -61.8 NC_004084.1 + 40495 0.74 0.119096
Target:  5'- aCCUGaUCGaccUGCagguggGACCAGCCCGCUCg -3'
miRNA:   3'- cGGACcAGC---ACGg-----CUGGUCGGGCGAG- -5'
16351 5' -61.8 NC_004084.1 + 45738 0.74 0.112863
Target:  5'- -gCUGGUCG-GCuaCGaACCAGUCCGCUCg -3'
miRNA:   3'- cgGACCAGCaCG--GC-UGGUCGGGCGAG- -5'
16351 5' -61.8 NC_004084.1 + 35952 0.76 0.083719
Target:  5'- cGCCggGGUCGgcgGCCguGACCAGuCCCGaCUCg -3'
miRNA:   3'- -CGGa-CCAGCa--CGG--CUGGUC-GGGC-GAG- -5'
16351 5' -61.8 NC_004084.1 + 12684 0.78 0.056901
Target:  5'- -aCUGGuUCGUaGCCGACCAGCaCCGCgUCg -3'
miRNA:   3'- cgGACC-AGCA-CGGCUGGUCG-GGCG-AG- -5'
16351 5' -61.8 NC_004084.1 + 8154 1.1 0.000222
Target:  5'- cGCCUGGUCGUGCCGACCAGCCCGCUCc -3'
miRNA:   3'- -CGGACCAGCACGGCUGGUCGGGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.