Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16352 | 3' | -62.4 | NC_004084.1 | + | 8197 | 0.66 | 0.432253 |
Target: 5'- uGGgGUUCGCGGAUGGcGUCgAGGuuGa -3' miRNA: 3'- gCCgCGGGCGCUUGCC-CAGgUCCugC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 37254 | 0.66 | 0.432253 |
Target: 5'- cCGGCGCUCGuCGAGgacucgcucuCGacaaUCCAGGACGu -3' miRNA: 3'- -GCCGCGGGC-GCUU----------GCcc--AGGUCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 7522 | 0.66 | 0.405701 |
Target: 5'- -uGCGCCCGag--UGGGugcagccgaUCCAGGACGg -3' miRNA: 3'- gcCGCGGGCgcuuGCCC---------AGGUCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 47366 | 0.66 | 0.405701 |
Target: 5'- gCGGCcgccccuucGUCCGCGucgucGACGGcGagcUCCAGGGCGc -3' miRNA: 3'- -GCCG---------CGGGCGC-----UUGCC-C---AGGUCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 14031 | 0.66 | 0.405701 |
Target: 5'- -cGCGCUCGUGGAcauCGGuGUUCAGGAgGu -3' miRNA: 3'- gcCGCGGGCGCUU---GCC-CAGGUCCUgC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 18964 | 0.66 | 0.405701 |
Target: 5'- uCGGCGCUCGCGccagucggccGGCGGGgaagucguaggUCCcgcuggcgGGGugGg -3' miRNA: 3'- -GCCGCGGGCGC----------UUGCCC-----------AGG--------UCCugC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 6754 | 0.66 | 0.38858 |
Target: 5'- aCGGCGuaaguCCCGCGGAagggcagucCGaGGUCUcggcgGGGACGu -3' miRNA: 3'- -GCCGC-----GGGCGCUU---------GC-CCAGG-----UCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 14648 | 0.66 | 0.383537 |
Target: 5'- cCGGCgagcgcccagucgauGCCCGCGAGCGucccGG-CCGGGuccuCGa -3' miRNA: 3'- -GCCG---------------CGGGCGCUUGC----CCaGGUCCu---GC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 16949 | 0.66 | 0.380199 |
Target: 5'- gGGCG-UCGCGAcguCGGGUCUucgagcgccuGGACGa -3' miRNA: 3'- gCCGCgGGCGCUu--GCCCAGGu---------CCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 41616 | 0.66 | 0.380199 |
Target: 5'- aGGaCGaaCGCGAgGCGacGGUCCGGGACa -3' miRNA: 3'- gCC-GCggGCGCU-UGC--CCAGGUCCUGc -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 16011 | 0.67 | 0.371121 |
Target: 5'- uCGGCcaccuccGCCCGUGAcugcGCGGGccUCCucgAGGAUGc -3' miRNA: 3'- -GCCG-------CGGGCGCU----UGCCC--AGG---UCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 27545 | 0.67 | 0.363804 |
Target: 5'- cCGGUGgCCGCGcACaaGGGccUCCcGGACGg -3' miRNA: 3'- -GCCGCgGGCGCuUG--CCC--AGGuCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 18130 | 0.67 | 0.355792 |
Target: 5'- cCGGCucgGCCCG-GAugGaGUCCGGGuCGa -3' miRNA: 3'- -GCCG---CGGGCgCUugCcCAGGUCCuGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 51937 | 0.67 | 0.332508 |
Target: 5'- aCGuuCGCUCaGcCGGGCGaGGUCCAGGACa -3' miRNA: 3'- -GCc-GCGGG-C-GCUUGC-CCAGGUCCUGc -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 7239 | 0.68 | 0.324999 |
Target: 5'- aGGauuUCCuCGAcUGGGUCCAGGACGa -3' miRNA: 3'- gCCgc-GGGcGCUuGCCCAGGUCCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 57594 | 0.68 | 0.310363 |
Target: 5'- aGuCGCCCGUcucGAACGGGUUgAGGAg- -3' miRNA: 3'- gCcGCGGGCG---CUUGCCCAGgUCCUgc -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 47907 | 0.69 | 0.282608 |
Target: 5'- aCGGuCGCuCCGCGAggugccGCGcGaUCCAGGGCa -3' miRNA: 3'- -GCC-GCG-GGCGCU------UGC-CcAGGUCCUGc -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 6154 | 0.69 | 0.282608 |
Target: 5'- cCGGgGUUCcugGCGAuCGGGcUCCAGGugGa -3' miRNA: 3'- -GCCgCGGG---CGCUuGCCC-AGGUCCugC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 46855 | 0.69 | 0.269485 |
Target: 5'- -cGCGUCCGUGAACGucUCCuguGGGCGg -3' miRNA: 3'- gcCGCGGGCGCUUGCccAGGu--CCUGC- -5' |
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16352 | 3' | -62.4 | NC_004084.1 | + | 54113 | 0.7 | 0.244718 |
Target: 5'- aCGaCGCCCGCGAucaccgGCGGGacgUCguGGACu -3' miRNA: 3'- -GCcGCGGGCGCU------UGCCC---AGguCCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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