miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16352 3' -62.4 NC_004084.1 + 41616 0.66 0.380199
Target:  5'- aGGaCGaaCGCGAgGCGacGGUCCGGGACa -3'
miRNA:   3'- gCC-GCggGCGCU-UGC--CCAGGUCCUGc -5'
16352 3' -62.4 NC_004084.1 + 16949 0.66 0.380199
Target:  5'- gGGCG-UCGCGAcguCGGGUCUucgagcgccuGGACGa -3'
miRNA:   3'- gCCGCgGGCGCUu--GCCCAGGu---------CCUGC- -5'
16352 3' -62.4 NC_004084.1 + 14648 0.66 0.383537
Target:  5'- cCGGCgagcgcccagucgauGCCCGCGAGCGucccGG-CCGGGuccuCGa -3'
miRNA:   3'- -GCCG---------------CGGGCGCUUGC----CCaGGUCCu---GC- -5'
16352 3' -62.4 NC_004084.1 + 6754 0.66 0.38858
Target:  5'- aCGGCGuaaguCCCGCGGAagggcagucCGaGGUCUcggcgGGGACGu -3'
miRNA:   3'- -GCCGC-----GGGCGCUU---------GC-CCAGG-----UCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 14031 0.66 0.405701
Target:  5'- -cGCGCUCGUGGAcauCGGuGUUCAGGAgGu -3'
miRNA:   3'- gcCGCGGGCGCUU---GCC-CAGGUCCUgC- -5'
16352 3' -62.4 NC_004084.1 + 18964 0.66 0.405701
Target:  5'- uCGGCGCUCGCGccagucggccGGCGGGgaagucguaggUCCcgcuggcgGGGugGg -3'
miRNA:   3'- -GCCGCGGGCGC----------UUGCCC-----------AGG--------UCCugC- -5'
16352 3' -62.4 NC_004084.1 + 47366 0.66 0.405701
Target:  5'- gCGGCcgccccuucGUCCGCGucgucGACGGcGagcUCCAGGGCGc -3'
miRNA:   3'- -GCCG---------CGGGCGC-----UUGCC-C---AGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 7522 0.66 0.405701
Target:  5'- -uGCGCCCGag--UGGGugcagccgaUCCAGGACGg -3'
miRNA:   3'- gcCGCGGGCgcuuGCCC---------AGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 37254 0.66 0.432253
Target:  5'- cCGGCGCUCGuCGAGgacucgcucuCGacaaUCCAGGACGu -3'
miRNA:   3'- -GCCGCGGGC-GCUU----------GCcc--AGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 8197 0.66 0.432253
Target:  5'- uGGgGUUCGCGGAUGGcGUCgAGGuuGa -3'
miRNA:   3'- gCCgCGGGCGCUUGCC-CAGgUCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.