Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16352 | 3' | -62.4 | NC_004084.1 | + | 27831 | 0.7 | 0.238829 |
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Target: 5'- gCGGCGUCCGCGA---GGUCaC-GGACGa -3' miRNA: 3'- -GCCGCGGGCGCUugcCCAG-GuCCUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 49188 | 0.7 | 0.21645 |
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Target: 5'- uGGaCGCCCugauCGAGCaGGucaUCCAGGACGg -3' miRNA: 3'- gCC-GCGGGc---GCUUGcCC---AGGUCCUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 9134 | 0.7 | 0.21645 |
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Target: 5'- uCGGCGUCCGuCGGGCGGaaGUCgAGGGg- -3' miRNA: 3'- -GCCGCGGGC-GCUUGCC--CAGgUCCUgc -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 29436 | 0.71 | 0.205949 |
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Target: 5'- aCGGCGagcuucaCCGCGAACGcGG-CguGGGCGc -3' miRNA: 3'- -GCCGCg------GGCGCUUGC-CCaGguCCUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 2839 | 0.73 | 0.151829 |
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Target: 5'- uCGGCGUCCGCGGugGa-UCgCAGGACa -3' miRNA: 3'- -GCCGCGGGCGCUugCccAG-GUCCUGc -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 10451 | 0.73 | 0.151829 |
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Target: 5'- cCGGaaGCCCGCGAgGCGa-UCCAGGACGg -3' miRNA: 3'- -GCCg-CGGGCGCU-UGCccAGGUCCUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 43782 | 0.74 | 0.123272 |
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Target: 5'- gGGCGCUCGCcGGCGGagaGUCCGGcGGCGa -3' miRNA: 3'- gCCGCGGGCGcUUGCC---CAGGUC-CUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 22461 | 0.75 | 0.110646 |
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Target: 5'- gGGCGCUCGCGAcggcugcguggugGCGGcuccaGUUCGGGACGu -3' miRNA: 3'- gCCGCGGGCGCU-------------UGCC-----CAGGUCCUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 1568 | 0.99 | 0.001745 |
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Target: 5'- cCGGaGCCCGCGAACGGGUCCAGGACGa -3' miRNA: 3'- -GCCgCGGGCGCUUGCCCAGGUCCUGC- -5' |
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| 16352 | 3' | -62.4 | NC_004084.1 | + | 7604 | 1.08 | 0.000307 |
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Target: 5'- cCGGCGCCCGCGAACGGGUCCAGGACGa -3' miRNA: 3'- -GCCGCGGGCGCUUGCCCAGGUCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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